Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_019515.1 Length=93839 Score E Sequences producing significant alignments: (Bits) Value seq2 114 8e-21 >seq2 Length=183582 Score = 114 bits (126), Expect = 8e-21 Identities = 217/315 (69%), Gaps = 6/315 (2%) Strand=Plus/Minus Query 78365 ATGATTCTTGTAAATATGAGCGTCACCGATTGTGTGAATGAAGTCTCCTACTTCCAGTCC 78424 |||||| | ||||||||||| ||||| || || || || ||||| ||| ||| Sbjct 181765 ATGATTTTCATAAATATGAGCATCACCAATAAAATGTATAAATTCTCCAGGTTCATATCC 181706 Query 78425 GCACAAATGCGCAATAATATGTGTAAGTAATGCGTATGAAGCAATGTTAAATGGAATTCC 78484 || | ||| ||||| ||| | ||||| || || ||||| ||||||||| ||| Sbjct 181705 ACATATATGAGCAATCATAACACATAATAATGAATAAGATGCAATATTAAATGGACATCC 181646 Query 78485 TAAGAATACGTCACCGCTTCGTTGGTACAATTGGCAACTTAGCTTTCCATCAACTGAT-- 78542 ||| || |||| |||| ||| || ||| |||||||| | || | | || Sbjct 181645 TAAACCTAAATCACAACTTCTTTGATATAATGAGCAACTTAATCTATTATTA--TTATCA 181588 Query 78543 ACGTAAAACTGGAATAGAGTGTGACAAGGCGGTAGTGCCATATCATCTAAGT-CAGCAGG 78601 || ||||| || ||| | |||||||| |||| |||||||| || | | | ||| || Sbjct 181587 ACATAAAATTGAGATAATATATGACAAGGTGGTAATGCCATAT-ATTTCATTGCAGATGG 181529 Query 78602 ATTCCAAGCAGACACAATATGTCTGCGTCCGTAAGGGTCTTTCATAATAGATTCTATTAC 78661 |||||| ||||| | |||||||| | | ||||| | |||| ||| ||||| |||| Sbjct 181528 ATTCCATGCAGATAAGATATGTCTTCTATCATAAGGATTTTTCTTAAGTGATTCAATTAA 181469 Query 78662 ATTAGCTATTTGGTC 78676 ||| | || ||| || Sbjct 181468 ATTTGATAATTGATC 181454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300158986678600