Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq213 179 5e-40 seq211 150 3e-31 seq240 129 9e-25 >seq213 Length=131909 Score = 179 bits (198), Expect = 5e-40 Identities = 196/258 (76%), Gaps = 7/258 (3%) Strand=Plus/Minus Query 155802 AATAAAAATTTAT--GTAA----TAA-AATGCAAATATTTATTAAAACATTGACTGGAAA 155854 |||| | |||||| |||| ||| ||||||||| ||| ||||||| || ||||| || Sbjct 113828 AATATATATTTATTTGTAAGACTTAAGAATGCAAATTTTTGTTAAAACCTTAACTGGGAA 113769 Query 155855 AACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACA 155914 |||||||||||||||||| ||| |||||||| ||| ||| || || || ||||| Sbjct 113768 AACTATTACATTAGAAGTTGAACCTTCTGATACAATTGAAAATGTAAAGGCAAAGATACA 113709 Query 155915 AGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGA 155974 ||| || || || ||||||||||| |||||| | || || | ||| || ||||| || || Sbjct 113708 AGACAAGGAGGGAATACCTCCAGATCAACAACGTTTAATCTTTGCTGGAAAGCAACTTGA 113649 Query 155975 AGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 |||| ||||||||||||||| || ||||| || ||| | || | |||||||| || Sbjct 113648 AGATGGCAGAACTTTATCAGACTACAATATTCAGAAGGAGTCTACTTTACATTTAGTTTT 113589 Query 156035 AAGATTAAGAGGCGGTGT 156052 || ||| | || ||||| Sbjct 113588 GAGGTTACGTGGTGGTGT 113571 >seq211 Length=153182 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || || || || ||||| || ||| | ||||| ||| ||| Sbjct 121571 ATGCAGATTTTTGTGAAGACTTTAACGGGTAAAACAATAACACTTGAAGTTGAACCATCT 121512 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || || |||||| |||||||||||||| || || || || ||| Sbjct 121511 GATACTATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGAAGGGATTCCACCTGATCAA 121452 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| |||| ||| || || || || || ||| | |||||||| ||||||||| Sbjct 121451 CAAAGATTAATTTTTGCTGGGAAACAACTTGAGGATGGTCGGACTTTATCTGATTATAAT 121392 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || || | || ||||||||||| ||| | |||||||| ||| Sbjct 121391 ATTCAGAAGGAATCAACTCTTCATTTAGTTTTACGTTTAAGAGGTGGT 121344 >seq240 Length=77866 Score = 129 bits (142), Expect = 9e-25 Identities = 344/513 (67%), Gaps = 19/513 (4%) Strand=Plus/Minus Query 18199 TTCGTTACTAAACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGC 18258 ||| ||| ||| ||||| || ||||||| || | ||| || ||||||||||| | Sbjct 77864 TTCATTAGAAAATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAGCACA 77805 Query 18259 GAAACTACTAGAAAAGAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAA 18317 || || | |||||| || ||||| ||||| |||| | | | |||| |||||| |||| Sbjct 77804 AAAGCTGCCAGAAAACAAGATACCTTCAACTGCACAAAAGC-CAATTACTCTTTCTGCAA 77746 Query 18318 A--ACTGTATTTATTGCTCAGTATCCATTTTTGTGCCCATTCT-CCTTNNNNNNNNATAC 18374 | || | ||||| ||| |||| ||| |||||||||| |||| | | Sbjct 77745 ATGACCGA--TTATTATTCA---TCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGC 77691 Query 18375 ACGGTATACTCTCTATAGCATTAAACAAATCATCTTTT--TCTTTGGAATCTTTTATATA 18432 |||| | ||| || | ||| || ||| | ||||| |||| |||||| Sbjct 77690 T-GGTAAATGTGATATTGCTTCAAA--AAGCATTTGGCGATCTTTTACATCTGATATATA 77634 Query 18433 AGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACT 18492 || ||||| | ||||| ||||| || || |||||||| || ||||| | Sbjct 77633 TTGATCAATTAAAAGGGAATAAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCC 77574 Query 18493 ATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAA-TTCT 18551 |||| || |||||| || ||||||||| || ||||| ||| | | || |||| Sbjct 77573 ATAATACATTCTAGCTTCTTCTATTTGAATCTC-CTTTAAAAAATTTACAGCTAAGTTCT 77515 Query 18552 CATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTT 18611 | | || || || ||| || ||| |||||||| || ||||||||||| |||||||||| Sbjct 77514 CCATTACAATTCCATCACTAGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTT 77455 Query 18612 CATTATCCTTGAGATTGTTCCATTCATCT-ATATCTTTTGATAGATCAACTTCTTCCGAT 18670 | ||||| | | | | ||| || ||| || || | || ||| | ||||| | Sbjct 77454 CTGGTTCCTTTAAACTTTCCCAATC-TCTCATGTCCTGACCTAAATCTATCTCTTCTGCA 77396 Query 18671 GTCCAAAAAGATGATTCGGCCTGTTTGTACATT 18703 |||||||| || | ||| | | |||||||||| Sbjct 77395 GTCCAAAATGAGGCTTCTTCTTTTTTGTACATT 77363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731869465893200