Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq211 196 9e-45 seq213 163 6e-35 seq240 152 1e-31 >seq211 Length=153182 Score = 196 bits (216), Expect = 9e-45 Identities = 180/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | |||||| |||||||| | ||| | || || |||||||||||||| Sbjct 121344 ACCACCTCTTAAACGTAAAACTAAATGAAGAGTTGATTCCTTCTGAATATTATAATCAGA 121403 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||| || || |||| || | |||||| |||||||| |||||||| |||||||||||||| Sbjct 121404 TAAAGTCCGACCATCCTCAAGTTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGTGG 121463 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||||||||| |||||| |||||||| |||| ||| || | ||| || Sbjct 121464 AATCCCTTCTTTATCTTGAATTTTAGCCTTTACATTTTCAATAGTATCAGATGGTTCAAC 121523 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| || || || |||||||| ||||| || || | ||| |||||||| Sbjct 121524 TTCAAGTGTTATTGTTTTACCCGTTAAAGTCTTCACAAAAATCTGCAT 121571 >seq213 Length=131909 Score = 163 bits (180), Expect = 6e-35 Identities = 177/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362 ||||| |||||| | | | || |||||||||||||||| ||| || ||||| || Sbjct 113567 AATAACACCACCACGTAACCTCAAAACTAAATGTAAAGTAGACTCCTTCTGAATATTGTA 113626 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 || ||||| |||| |||| || | ||| || |||||||||||||| | |||||||| Sbjct 113627 GTCTGATAAAGTTCTGCCATCTTCAAGTTGCTTTCCAGCAAAGATTAAACGTTGTTGATC 113686 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 || |||||||| || || |||||||| || |||||||| || | ||| || | Sbjct 113687 TGGAGGTATTCCCTCCTTGTCTTGTATCTTTGCCTTTACATTTTCAATTGTATCAGAAGG 113746 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||| ||||||| ||||| ||||| |||||||| ||||||| ||| || |||||| Sbjct 113747 TTCAACTTCTAATGTAATAGTTTTCCCAGTTAAGGTTTTAACAAAAATTTGCATT 113801 >seq240 Length=77866 Score = 152 bits (168), Expect = 1e-31 Identities = 349/516 (68%), Gaps = 25/516 (5%) Strand=Plus/Minus Query 49865 TTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGC 49924 ||||||| ||| |||||||| ||||||||||| | || |||||||||||||| | Sbjct 77864 TTCATTAGAAAATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAGCACA 77805 Query 49925 AAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATGCTA-TTATTCTTGCTCCAA 49983 ||| || | |||||| || ||||| || || | |||| || | ||| |||| || ||| Sbjct 77804 AAAGCTGCCAGAAAACAAGATACCTTCAACTG-CACAAAAGCCAATTACTCTTTCTGCAA 77746 Query 49984 ACATTAATTTATCATCTAAT-ATCCAATTTATAGCCCAATCTGCtttttttttGATAGAA 50042 | | | || || || | ||||| ||| | ||||| ||||| || |||| | | Sbjct 77745 A---TGACCGATTAT-TATTCATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCT 77690 Query 50043 GGTATATTTTCTATAGCTTTAAATA--ATTC----AtttttttCATNNNNNNNNNNNNNN 50096 |||| || | ||| |||| ||| | ||| || |||| ||| Sbjct 77689 GGTAAATGTGATATTGCTTCAAAAAGCATTTGGCGATCTTTTACATCTGATATATATTGA 77630 Query 50097 NNNNNNNNNATTAATAAAGAATACATTTCAGAATGTA-CAGCTTCCATAGCTATTTGAAA 50155 ||||| | ||||| ||||| || | | ||| ||||||| |||||||| Sbjct 77629 TCA------ATTAAAAGGGAATAAGTTTCACTGTGAATCTGCT-CCATAGCAATTTGAAA 77577 Query 50156 TGAATAAAATTGTCTTGCTTCTGAATACTGAA-CTTCGGAAAAGAATCGTTCAACTAAAT 50214 | |||| | ||| |||||| |||| || | ||| ||| | || |||| | Sbjct 77576 TCCATAATACATTCTAGCTTCTTCTATTTGAATCTCCTTTAAAAAATT-TACAGCTAAGT 77518 Query 50215 TCTCAGATACAATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTT 50274 |||| |||||| |||||| ||||| || |||||||| || |||||||||||||||| Sbjct 77517 TCTCCATTACAATTCCATCACTAGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTT 77458 Query 50275 TTTCATTATCTTTTAAATTTTCCCAAGAT-TCAAGATCGTTTGATAAATCTACTTCTTCT 50333 |||| || |||||| |||||||| | ||| | || | |||||||| |||||| Sbjct 77457 TTTCTGGTTCCTTTAAACTTTCCCAATCTCTCATG-TCCTGACCTAAATCTATCTCTTCT 77399 Query 50334 ATTGTCCAAAATGATGCTACGGATTTTTTATACATT 50369 ||||||||||| ||| | |||||| |||||| Sbjct 77398 GCAGTCCAAAATGAGGCTTCTTCTTTTTTGTACATT 77363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984476506018950