Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq211 187 5e-42 seq213 156 8e-33 seq141 154 3e-32 seq240 118 2e-21 >seq211 Length=153182 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||||||||| | ||||| |||||||| | ||| | || || |||||||||||| || Sbjct 121344 ACCACCTCTTAAACGTAAAACTAAATGAAGAGTTGATTCCTTCTGAATATTATAATCAGA 121403 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||||| || | || || | |||||| ||||||||||||||||| ||||| |||||||| Sbjct 121404 TAAAGTCCGACCATCCTCAAGTTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGTGG 121463 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || |||||||||||||| |||||| |||||||| |||||||| || | ||| || Sbjct 121464 AATCCCTTCTTTATCTTGAATTTTAGCCTTTACATTTTCAATAGTATCAGATGGTTCAAC 121523 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| || || || |||||||| ||||| || || | || |||||||| Sbjct 121524 TTCAAGTGTTATTGTTTTACCCGTTAAAGTCTTCACAAAAATCTGCAT 121571 >seq213 Length=131909 Score = 156 bits (172), Expect = 8e-33 Identities = 175/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 |||| |||||| | | | || |||||||||||||||| ||| || |||||| || Sbjct 113568 ATAACACCACCACGTAACCTCAAAACTAAATGTAAAGTAGACTCCTTCTGAATATTGTAG 113627 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 |||||||||| || | || || | ||| || |||||||| ||||| | ||||| || Sbjct 113628 TCTGATAAAGTTCTGCCATCTTCAAGTTGCTTTCCAGCAAAGATTAAACGTTGTTGATCT 113687 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || |||||||| || || |||||||| || |||||||| || ||||| || | | Sbjct 113688 GGAGGTATTCCCTCCTTGTCTTGTATCTTTGCCTTTACATTTTCAATTGTATCAGAAGGT 113747 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || ||||||| ||||| ||||| |||||||| ||||||| || || |||||| Sbjct 113748 TCAACTTCTAATGTAATAGTTTTCCCAGTTAAGGTTTTAACAAAAATTTGCATT 113801 >seq141 Length=3141 Score = 154 bits (170), Expect = 3e-32 Identities = 264/373 (71%), Gaps = 15/373 (4%) Strand=Plus/Minus Query 38833 TTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAAT 38892 |||||||||||| ||| ||| || |||||||| ||||| |||| |||||| || | || Sbjct 368 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 309 Query 38893 TCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC-AATACATATAAT 38951 ||| ||||||||||||| || ||| | ||| ||| ||| | | || | | | Sbjct 308 CCATCCAATCAAATGGATTCGTGACATTGT-ATAACTTTGGAACATCTAGTGCAAACAGT 250 Query 38952 AATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT--A 39009 || | ||| || |||||||||| |||||| ||||||| | ||||||| |||||| Sbjct 249 AAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCAT-CCCAATGAG 191 Query 39010 ATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatta 39069 || || | ||||||| |||| | |||| ||| | ||| ||||||| | || | Sbjct 190 ATCTACA-GGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTATAA 132 Query 39070 tcataattatattattt---tttgataatttatatttaatatgattcgcatataGTAAAC 39126 | | || | | ||| | || | |||||| ||| || ||| ||||||| Sbjct 131 T--TTCTTGAACTCTTTCACATGGAAGACGATTATTTA--ATGTTT--TATAAAGTAAAC 78 Query 39127 ATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATC 39186 || |||| |||| ||| | |||||| || |||||||| | ||||||| ||| ||||||| Sbjct 77 ATCCAAAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATC 18 Query 39187 CTGGCATTAATCC 39199 | ||||||||||| Sbjct 17 CAGGCATTAATCC 5 >seq240 Length=77866 Score = 118 bits (130), Expect = 2e-21 Identities = 169/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 39441 TCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACTGAA-CTTCGGAAAA 39499 |||||||| ||||||||| |||| | || |||||| |||| || | ||| Sbjct 77593 TCCATAGCAATTTGAAATCCATAATACATTCTAGCTTCTTCTATTTGAATCTCCTTTAAA 77534 Query 39500 GAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATGCTAAAAC 39559 ||| | || |||| ||||| |||||| |||||| ||||| || |||||||| || Sbjct 77533 AAATT-TACAGCTAAGTTCTCCATTACAATTCCATCACTAGCTGCAAAAAATGCTAAGAC 77475 Query 39560 ATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGAT-TCAAGATCGTTTG 39618 ||||||||||||||||||||| || |||||| |||||||| | ||| | || | Sbjct 77474 ATATTTAATAAAATGTTTTTCTGGTTCCTTTAAACTTTCCCAATCTCTCATG-TCCTGAC 77416 Query 39619 ATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTTTATACATT 39671 |||||||| |||||| |||||||| || ||| | |||||| |||||| Sbjct 77415 CTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTCTTTTTTGTACATT 77363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905132865966600