Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq213 107 2e-18 seq211 91.5 1e-13 >seq213 Length=131909 Score = 107 bits (118), Expect = 2e-18 Identities = 169/241 (70%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || ||||| | |||||||||||| | ||||| || || || || ||||| || Sbjct 113574 CCACCACGTAACCTCAAAACTAAATGTAAAGTAGACTCCTTCTGAATATTGTAGTCTGAT 113633 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| ||||| || |||||| |||| | |||||| ||||| |||||| Sbjct 113634 AAAGTTCTGCCATCTTCAAGTTGCTTTCCAGCAAAGATTAAACGTTGTTGATCTGGAGGT 113693 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || || ||||| || ||| |||| | ||| | || || | ||||| ||| Sbjct 113694 ATTCCCTCCTTGTCTTGTATCTTTGCCTTTACATTTTCAATTGTATCAGAAGGTTCAACT 113753 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTATGTTTTA 137424 || | || | || || || || || ||||| || || |||||||| |||| || ||| Sbjct 113754 TCTAATGTAATAGTTTTCCCAGTTAAGGTTTTAACAAAAATTTGCAT-TCTTAAGTCTTA 113812 Query 137425 C 137425 | Sbjct 113813 C 113813 >seq211 Length=153182 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| |||||| ||||||||||||| || ||||| || || || || ||||| Sbjct 121345 CCACCTCTTAAACGTAAAACTAAATGAAGAGTTGATTCCTTCTGAATATTATAATCAGAT 121404 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | || || |||||||| |||||| | || | | ||| ||||| || || Sbjct 121405 AAAGTCCGACCATCCTCAAGTTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGTGGA 121464 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || |||||||| || |||||| |||| | ||| | || || | ||||| ||| Sbjct 121465 ATCCCTTCTTTATCTTGAATTTTAGCCTTTACATTTTCAATAGTATCAGATGGTTCAACT 121524 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| || | || || || || || || || || || || |||||| Sbjct 121525 TCAAGTGTTATTGTTTTACCCGTTAAAGTCTTCACAAAAATCTGCATA 121572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488542308416400