Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq211 223 7e-53 seq213 208 1e-48 >seq211 Length=153182 Score = 223 bits (246), Expect = 7e-53 Identities = 189/233 (81%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||| ||||| | |||||| || ||||| ||||| ||||| |||||||||||||| Sbjct 121344 ACCACCTCTTAAACGTAAAACTAAATGAAGAGTTGATTCCTTCTGAATATTATAATCAGA 121403 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | | ||| || || |||||||| |||||||| |||| |||||||||||| || || Sbjct 121404 TAAAGTCCGACCATCCTCAAGTTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGTGG 121463 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| ||||||||||| || || |||||||||||||| |||||| ||||| || Sbjct 121464 AATCCCTTCTTTATCTTGAATTTTAGCCTTTACATTTTCAATAGTATCAGATGGTTCAAC 121523 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTA 82815 ||| | ||||| || || || || || ||||| ||||| |||||||| |||| Sbjct 121524 TTCAAGTGTTATTGTTTTACCCGTTAAAGTCTTCACAAAAATCTGCATAATTA 121576 >seq213 Length=131909 Score = 208 bits (230), Expect = 1e-48 Identities = 177/218 (81%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 || |||||| || | |||||| || ||||| ||||| || || |||| | |||| || || Sbjct 113588 CAAAACTAAATGTAAAGTAGACTCCTTCTGAATATTGTAGTCTGATAAAGTTCTGCCATC 113647 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 ||| ||||| |||||||||||||||| | ||||||||||||||||||||| ||||| || Sbjct 113648 TTCAAGTTGCTTTCCAGCAAAGATTAAACGTTGTTGATCTGGAGGTATTCCCTCCTTGTC 113707 Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 ||| |||||||| |||||||||||||| |||||| |||||| ||||| || || || || Sbjct 113708 TTGTATCTTTGCCTTTACATTTTCAATTGTATCAGAAGGTTCAACTTCTAATGTAATAGT 113767 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTA 82815 || || || || || || ||||| || |||||| ||| Sbjct 113768 TTTCCCAGTTAAGGTTTTAACAAAAATTTGCATTCTTA 113805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981823715433903