Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq46 136 9e-27 seq240 96.9 8e-15 seq199 87.8 4e-12 seq183 84.2 5e-11 >seq46 Length=25720 Score = 136 bits (150), Expect = 9e-27 Identities = 566/886 (64%), Gaps = 13/886 (1%) Strand=Plus/Minus Query 110272 TTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTG 110331 |||| |||| || ||||| | ||| ||||||||||| ||| || ||||| ||| | Sbjct 4716 TTATTGATTTTAGCCGTGATTTTGAATATGACTATTTTGCTTTTAAGACTCTAGAAAGAT 4657 Query 110332 CTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTG 110391 |||||||||| || ||| ||| |||| | ||| | || |||||| | || | | | Sbjct 4656 CTTATTTACTGCGGGTCGATGATAAGATTGTGGAAAGGCCACAACACCTATTAATGAGAG 4597 Query 110392 TTGCGATTGGTATTC---ATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTAT 110448 | | |||||| | |||| | |||| | || | |||||| |||||| | Sbjct 4596 TCTCCTGTGGTATCCACTATGG---TAATATAGATGCAGCAATTGAAACTTATGAACTGC 4540 Query 110449 TAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAG 110508 | | | ||| | || |||||||||||| || |||| || || || ||| | | Sbjct 4539 TCTCTCAGAAGTATTTTACTCATGCTACTCCGACATTATTCAATGCTGGTACTCTTCGCC 4480 Query 110509 GACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATG 110568 ||| || | ||||| ||| |||| ||| ||||| || ||||| || |||| || Sbjct 4479 CACAGATGTCCTCTTGTTTTATTCTCAAAATGTCAGATGACTCAATTGATGGCATTTTTG 4420 Query 110569 ATGCTCTTAAAGAAA-CTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTT 110627 || | | |||||||| ||| ||| || | |||| ||| | || | ||| Sbjct 4419 ATACAC-TAAAGAAATGTGCAAATATAAGCAAGACTGCTGGTGGATTAGGGGTGGCTGTT 4361 Query 110628 CATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTT 110687 | |||| || | |||| || | ||| | || ||| || | ||| | Sbjct 4360 TCTAATATACGAGCTGCAGGATCATACATCCGTGGTACTAATGGTAGGTCTAATGGTTTA 4301 Query 110688 GTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGT---GGTAAG 110744 |||||||| | | || | || || || ||| ||||| | |||||| || || Sbjct 4300 ATTCCAATGCTGCGTGTGTATAATGATACAGCACGTTATGTTGACCAAGGTGGAGGAAAA 4241 Query 110745 AGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTA 110804 || || || || ||||| ||||| | |||||||||||| | ||| | || ||||| || Sbjct 4240 AGGAAGGGTGCACTTGCTGTCTATTTGGAACCTTGGCATGCGGATGTTTTGGAATTTATA 4181 Query 110805 GAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATG 110864 || | | || || || || || || ||| |||||| ||||| ||| | Sbjct 4180 GAGATAAGGAAGAACCATGGTAAAGAGGAGATGAGATGCCGTGATATATTTCCAGCACTA 4121 Query 110865 TGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGT 110924 ||||| | ||| | |||||| | | || | | ||| | ||| | | |||||| Sbjct 4120 TGGATACCTGATCTGTTCATGGAGAGAGTAGAGAAGGATGCAAACTGGACATTAATGTGT 4061 Query 110925 CCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAA 110984 ||| || | ||||| | ||||| | || | | ||| |||| | || ||| Sbjct 4060 CCTGATGAATGCCCTGGGATGCAAGATGTCTGGGGTGACCAATTTAAAGAATTATATGAA 4001 Query 110985 AAATATGAAAAAGAAGG-CAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAA 111043 | |||||||||||||| | | | | |||| |||| ||| ||| | ||||| Sbjct 4000 CACTATGAAAAAGAAGGTCGCGGTAGGAAAAC-AATTAAAGCACAAAGTTTGTGGTTTGC 3942 Query 111044 AATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAA 111103 | | || | |||||| |||| || || ||||| | ||||| ||||| ||| ||| Sbjct 3941 ATTGCTACAGTCACAAATTGAGACAGGTACTCCATTTATTTGCTATAAGGATGCAGCTAA 3882 Query 111104 TCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAAT 111149 ||| ||| |||||| ||| | || || || || ||||| ||| Sbjct 3881 TCGTAAAAGCAATCAACAAAATCTGGGTACGATAAAATCTAGCAAT 3836 >seq240 Length=77866 Score = 96.9 bits (106), Expect = 8e-15 Identities = 137/185 (74%), Gaps = 7/185 (4%) Strand=Plus/Plus Query 131786 TTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCT 131845 || || ||| |||||| || ||||||||||| | || ||||| | || || || | Sbjct 77685 TTACCAGCAGTTAAAACTAAGGCAGAATGGGCAACAAAGTGGATGAATAATAAT--CGGT 77742 Query 131846 AATTTTTCTACAAGACTTGTAG-CTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGG-TG 131903 |||| | |||| | | | |||||| | ||||||||||| || ||||| || | Sbjct 77743 CATTTGCAGA-AAGAGTAATTGGCTTTTG-TGCAGTTGAAGGTATCTTGTTTTCTGGCAG 77800 Query 131904 CTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCA 131963 |||| |||||||| |||||||||||||| |||||||| ||||||||| | |||| || | Sbjct 77801 CTTT-TGTGCTATATTTTGGCTTAAGAAACGTGGATTAATGCCTGGATTAACATTTTCTA 77859 Query 131964 ATCAA 131968 || || Sbjct 77860 ATGAA 77864 >seq199 Length=54927 Score = 87.8 bits (96), Expect = 4e-12 Identities = 163/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 279857 TCTATTCCTCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATT--ATATTCAGTT 279914 |||||||| || | || ||||| || || ||| ||| | || || |||||| || Sbjct 24170 TCTATTCCAAATGTTATAGATGGATTAAAGCCTGGACAAAGGAAAGTTTTATATTCTGT- 24228 Query 279915 GTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAG 279974 |||| ||||||| | ||| | |||| || || || ||||| ||||||||| | | Sbjct 24229 GTTTAAAAAGAAGCTGAATAATG-AAATGAAAGTAGCACAATTAGCTGGTTATGTTGCTG 24287 Query 279975 AACATGCAGGTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCC 280034 ||||| | || ||||| |||||||| ||| | || || | |||||| | | || | Sbjct 24288 AACATAGTGCATACCATCATGGTGAAGCTTCTTTACAGAGTACGATTGTAAATATGGCGC 24347 Query 280035 AAGATTTTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGT 280090 |||||||| | | ||||| || || | ||| ||| ||||||||||||| Sbjct 24348 AAGATTTTGTTGGAAGTAACAATTTGAACTTACTTCAGCCATGTGGTCAATTTGGT 24403 >seq183 Length=107568 Score = 84.2 bits (92), Expect = 5e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 305405 ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAA 305464 || ||| |||| |||| | |||||||| | ||||||||||| ||||||||||| |||||| Sbjct 66290 ACTTTTAGATTTAATGAATGTGCTTGTGCTCCTTATAATGCAGATTTTGATGGTGATGAA 66231 Query 305465 ATGAATATGCATGTACCTCAA 305485 ||||| | ||| | |||||| Sbjct 66230 ATGAACCTCCATATGCCTCAA 66210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186808587927197