Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq46 378 1e-99 seq240 163 4e-35 seq141 118 1e-21 >seq46 Length=25720 Score = 378 bits (418), Expect = 1e-99 Identities = 1217/1866 (65%), Gaps = 42/1866 (2%) Strand=Plus/Plus Query 68400 TTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCAT 68459 || ||| | || ||||| ||| ||||| | ||| ||||||| ||||| ||||| Sbjct 2885 TTGTGTTCTTAAGTAGTAAGCACCAGTTTTTAAACCCTTCTTCCATCCATAGAAGTGCAT 2944 Query 68460 ACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATC 68519 | | ||| || | ||| | | || || |||| |||||| | || ||| |||| Sbjct 2945 AGAAGATAGCTTTGCATAGTTGGCATTTGCAATATAAATATTTAGAGACTGAGATTGACA 3004 Query 68520 GATGAAAGCTCCTCTATCTGCCGCCATTTTTATAA-TACTCTTTTGAGGAATTTCCCAAA 68578 ||| | | |||||||||||||||||| | |||| | || ||||| ||||||||| | Sbjct 3005 AATGTATGGTCCTCTATCTGCCGCCATATCAATAACTGCT-TTTTGTCTAATTTCCCAGA 3063 Query 68579 TAGTCTTAAAAATCTGTTTGATATCATCTGGAA--GGCTCG-TATTTTGAATGGATCCAC 68635 || || | | | ||||| || | | ||| ||||||||| |||| Sbjct 3064 CGGTTTTGTACAGGTCGCGAATATCTCGCGGTATAGACTCAATATTTTGAACACTTCCAT 3123 Query 68636 CATCGGATATAATTATATTCTTGA-TCTCATCATTCCACAATTTTCTCTCCGTTAAAACT 68694 | | || || | | || | |||| |||| ||| | | || |||| | Sbjct 3124 TGTTAGCAATGATACTCTGTTTCAGTCTC-TCATCCCATAGTCCCAATTCAAGTAAATCA 3182 Query 68695 CTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATA 68754 | | | ||| ||||| || | || |||||||| || || | | | || ||| Sbjct 3183 TTCAACAAATGAGGATTCACAACAAAGAACTCCCCAGACAATACACGCCTATGATATATA 3242 Query 68755 TTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTT 68814 || |||| ||||||| | ||||||||| || || | |||| || ||||| || Sbjct 3243 TTTGAGGTAAATGGTTCAAAGCTTTCATTATTCCCTAGTAACTGAGATGTAGATGCGGTA 3302 Query 68815 GGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGA 68874 ||||| || || ||||| || |||||||| |||| | ||||| || || || Sbjct 3303 GGCATTGGAGCTACCAACAACGAGTTTCTAAGGCCATACTTAGCTATTTTCTCCTTCAGT 3362 Query 68875 TGTTTCCAATCCCAAAGATCAGATG---GTACAACATTCCAAAGATCGTATTGTAGAATT 68931 | ||| | |||||| | || | || |||||||| ||||| ||||||| | Sbjct 3363 AAATCCCAGTTCCAAAGTCCTGAGGAGGGTTGCACATTCCAGAGATCAAATTGTAGCAGA 3422 Query 68932 CCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCA 68991 || |||| || ||| || | | |||||||||| || || | || || ||||| ||| Sbjct 3423 CCTCTACTAGCTGGTGAACCTTGAAATGTTTCATAGGGACCATACTTCTCTGCTAGCTCA 3482 Query 68992 CAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT-CTTG 69050 |||||||| || | ||| | || || ||||| || || |||| ||| || | | || Sbjct 3483 CAACTTGCATCAAGAGCAGCATAGTATATTGTCTCAAATATCTCAACATTTAGTTTCCTG 3542 Query 69051 TGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAAC 69110 || ||| | || ||||||| || | ||||| |||||| | || || || Sbjct 3543 -GCATCTTTAGATTCATATGGATATCTCAATATCATAAAACAATCTGCAAGACCTTGTAC 3601 Query 69111 CCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCT-TCTGGAATAGGATAAT 69169 || | ||| | || ||||||||| ||| || || | || |||||||||||||||| Sbjct 3602 TCCTAAACCAAGTGGCCTATGTCTCAGATTAGACCTC-CTGCACTCTGGAATAGGATAAT 3660 Query 69170 AATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTT 69229 | | ||| |||| || ||| ||||| | | |||| || || || || | ||| | Sbjct 3661 ATCCACGATCAATAACTTCATTTAGATTCCTTGTTGCTACCTTTACTACTTCATATAGCT 3720 Query 69230 TGAGAAAATCAAATCGTCCAT-----CTAT-AACAAACATATTCAGTGCTACAGATGCTA 69283 | |||||| ||| || |||| |||||| | || ||| |||||| | Sbjct 3721 TTTTAAAATCGAATTTCTTATTATCCCTATCAACAAAACGAGGGAGCCCTATAGATGCCA 3780 Query 69284 GATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTAC 69343 ||||||||||| ||||| || ||| | | ||| | || || |||||||||||||| | Sbjct 3781 AGTTACAAACTGCGACCTCGTTTGAACTAGTATACTCCATAATTTCTGTACATAGATTGC 3840 Query 69344 TACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAA 69403 || |||| || || ||||||||||| ||||| || || ||| || ||||| || Sbjct 3841 TAGATTTTATCGTACCCAGATTTTGTTGATTGCTTTTACGATTAGCTGCATCCTTATAGC 3900 Query 69404 GAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGAC--CCT 69461 |||||| |||||||| || ||||| || || | ||| | ||||| || || Sbjct 3901 AAATAAATGGAGTACCTGTCTCAATTTGTGACT-----GTAGCAATGCAAACCACAAACT 3955 Query 69462 ---AGCATTTATTACGGTCTTGTAACGCTTC--TCTTTTTCATATTGTGTATATAGCCGT 69516 || || ||| | | | || ||| | ||||||||||| ||| ||||| | Sbjct 3956 TTGTGCTTTAATT--GTTTTCCTACCGCGACCTTCTTTTTCATAGTGTTCATATAATTCT 4013 Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 | |||| || ||||| ||||| | || ||||| ||||||| |||||||| |||| | Sbjct 4014 TTAAATTGGTCACCCCAGACATCTTGCATCCCAGGGCATTCATCAGGACACATTAATGTC 4073 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAG 69636 || |||| | || |||| | ||| || ||||| || ||||| || ||| ||| Sbjct 4074 CAGTTTGCATCCTTCTCTACTCTCTCCATGAACAGATCAGGTATCCATAGTGCTGGAAAT 4133 Query 69637 AGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATA 69696 | ||| | | ||| | || || || || || || | | || | ||| |||| | Sbjct 4134 ATATCACGGCATCTCATCTCCTCTTTACCATGGTTCTTCCTTATCTCTATAAATTCCAAA 4193 Query 69697 ATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCC 69756 | ||| | |||||| ||||| | ||| | || | | ||| | ||| ||| || Sbjct 4194 ACATCCGCATGCCAAGGTTCCAAATAGACAGCAAGTGCACCCTTCCTTTTTCCTCCACCT 4253 Query 69757 TGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGAT 69816 || || | || | || || | |||||| || | |||||| ||||| | ||||||||| Sbjct 4254 TGGTCAACATAACGTGCTGTATCATTATACACACGCAGCATTGGAATTAAACCATTAGAC 4313 Query 69817 TTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCT 69876 ||||||| || ||| || || |||| || || |||||| || || | ||| Sbjct 4314 CTACCATTAGTACCACGGATGTATGATCCTGCAGCTCGTATATTAGAAACAGCCACCCCT 4373 Query 69877 ATTCCTCCTGCCATTTTAGAGATTAGA---GCACAACGTTTCAATGTGTCATATATACCC 69933 | ||| || || | || | ||| | ||||| || | ||| ||| | || || Sbjct 4374 AATCCACCAGCAGTCTT---GCTTATATTTGCACATTTCTTTAGTGTATCAAAAATGCCA 4430 Query 69934 TCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTT 69993 || || |||||| ||| || |||| |||||| ||||| || | | | ||| Sbjct 4431 TCAATTGAGTCATCTGACATTTTGAGAATAAAACAAGAGGACATCTGTGGGCGAAGAGTA 4490 Query 69994 CCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTAT 70053 || ||||| |||||||| |||| || ||||| || | || | ||| ||||| | || Sbjct 4491 CCAGCATTGAATAATGTCGGAGTAGCATGAGTAAAATACTTCTGAGAGAGCAGTTCATAA 4550 Query 70054 GTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATA 70113 |||||||| |||| ||||||| | | || || || | ||| | ||| || | Sbjct 4551 GTTTCAATTGCTGCATCTATATTACCATAGTGGATACCACAGGAGACTCTCATTAATAGG 4610 Query 70114 TGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTT 70173 || || || | ||| || | |||| || | || | || ||| |||| ||||| Sbjct 4611 TGTTGTGGCCTTTCCACAATCTTATCATCGACCCGCAGTAAATAAGATCTTTCTAGAGTC 4670 Query 70174 TTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAAT-AATAACAGAATTTAGTTT 70232 ||||| ||||||||| ||| ||| || | | |||| |||||| || |||| | | Sbjct 4671 TTAAAAGCAAAATAGTCATATTCAAAATCAC-GGCTAAAATCAATAACTGAGTTTAATCT 4729 Query 70233 ATCCTT 70238 ||| || Sbjct 4730 ATCTTT 4735 >seq240 Length=77866 Score = 163 bits (180), Expect = 4e-35 Identities = 348/508 (69%), Gaps = 14/508 (3%) Strand=Plus/Minus Query 39658 TTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGC 39717 ||| ||||||||||| | ||||||||||| ||||| || || ||||||||||| ||| | Sbjct 77864 TTCATTAGAAAATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAGCA-C 77806 Query 39718 AAAAGAT-CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGT-CTCTCTCCG 39775 ||||| | |||||||| ||||| ||||| ||||| |||| || ||| | |||| || | Sbjct 77805 AAAAGCTGCCAGAAAACAAGATACCTTCAACTGCA-CAAAAGC--CAATTACTCTTTCTG 77749 Query 39776 TAACTTGT--ATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAG 39833 || | || ||||| |||||||| |||||| || || || | || || | Sbjct 77748 CAAATGACCGATTATTATTCATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTG 77689 Query 39834 GCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTAT 39893 | | | ||| || | ||| || || || | |||| | |||| || Sbjct 77688 GTAAATGTGATATTGCTTCAAAAAGCATTTGGCGATCTTTTACATCTGATATATATTGAT 77629 Query 39894 CTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAA 39953 | ||||| || ||| |||| || || | || || || || |||||||| ||| Sbjct 77628 CAATTAAAAGGGAATAAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATAAT 77569 Query 39954 AACATCTTGCTTCAGTAATTTGTACCTC-TGAACAAAATCTTTCCGCCAAATTTTCATTC 40012 | ||| ||||| ||||| | ||| | | ||||| || | || || || || | Sbjct 77568 ACATTCTAGCTTCTTCTATTTGAATCTCCTTTAAAAAAT-TTACAGCTAAGTTCTCCATT 77510 Query 40013 ACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG 40072 || |||||||||||||| ||||||||||| || |||| ||||||||||| |||||| | Sbjct 77509 ACAATTCCATCACTAGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTCT--G 77452 Query 40073 GGTG--TCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCC 40130 | | | || | | ||| || | || || | || ||||| ||||| || |||| Sbjct 77451 GTTCCTTTAAACTTTCCCAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCC 77392 Query 40131 AAAACGACGCCTCTGCCTTTTTGTACAT 40158 |||| || || ||| | ||||||||||| Sbjct 77391 AAAATGAGGCTTCTTCTTTTTTGTACAT 77364 >seq141 Length=3141 Score = 118 bits (130), Expect = 1e-21 Identities = 289/430 (67%), Gaps = 11/430 (3%) Strand=Plus/Minus Query 39271 TTAAAAGTCAACATCTAAA--GAAAAATGATTATCTTCTTGTGA--CATAACTCCCATTT 39326 |||||| ||| |||||| | ||||| | | | |||| ||| ||||||||| Sbjct 427 TTAAAATTCAGCATCTAGATTGAAAATTTGGTCT-TTCTGATGAGCCATAACTCCTGCCA 369 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 ||||||||||| | || |||||||| ||||| |||||||| |||| ||||| ||| | Sbjct 368 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 309 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446 |||| ||||||| ||||| || |||| ||| ||| || ||| | | | | | Sbjct 308 CCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGCAAACAGTA 249 Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506 | | ||| ||||||||||| || ||| ||| | | | ||||||| || ||||| | Sbjct 248 AACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAGAT 189 Query 39507 TAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG 39566 || |||| | || || ||| ||| | || || || |||| ||| || Sbjct 188 CTACAGGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTATAATTT 129 Query 39567 ATGTTACTACCTCATCACTCGGTGGATG--CAATAAATG-TTTAAACATTAAGCAGGCGA 39623 | ||| || |||| || || | | | |||| |||| | | ||| || | | Sbjct 128 CTTGAACT--CT-TTCACATGGAAGACGATTATTTAATGTTTTATAAAGTAAACATCCAA 72 Query 39624 AGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCA 39683 |||| ||| | || ||||||||| |||| ||| ||||||||||| | |||||||| Sbjct 71 AGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCAGGCA 12 Query 39684 TTAGACCACG 39693 ||| ||||| Sbjct 11 TTAATCCACG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686906421578280