Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_027349.1 Length=166977 Score E Sequences producing significant alignments: (Bits) Value seq2 102 9e-17 >seq2 Length=183582 Score = 102 bits (112), Expect = 9e-17 Identities = 229/335 (68%), Gaps = 8/335 (2%) Strand=Plus/Minus Query 141288 TTTACATTGTTCTACGTGATTCATATAGATATGAGTATTACCACCAGAAAATATCAAATC 141347 |||| |||| || || ||||| ||| ||||||| || |||| | || ||| || || Sbjct 181779 TTTA-ATTGCTCAACATGATTTTCATAAATATGAGCATCACCAATAAAATGTATAAATTC 181721 Query 141348 TCCTGGAATAAGATT-ACACATCTTAGCTACAATATGAACTAATGCAGCATATGATGCAA 141406 ||| || | | || ||| || | ||| | ||| | |||| | ||| ||||||| Sbjct 181720 TCCAGGT-TCATATCCACATATATGAGCAATCATAACACATAATAATGAATAAGATGCAA 181662 Query 141407 TGTTGAATGGCAAGCCCAAGAACACGTCAACACTTCTTTGATACCACT-GCAAATCCAAA 141465 | || ||||| | || || | ||| |||||||||||| | |||| | | Sbjct 181661 TATTAAATGGACATCCTAAACCTAAATCACAACTTCTTTGATATAATGAGCAACTTAATC 181602 Query 141466 TAGCC--ATTACGCACATTAAACTGATAGAACATATGACAAGGCGGTAATGCCATATATT 141523 || |||| |||| ||| ||| | || ||||||||||| |||||||||||||||| Sbjct 181601 TATTATTATTATCAACATAAAATTGAGATAATATATGACAAGGTGGTAATGCCATATATT 181542 Query 141524 TAAGTTCAGCTGGATTCCATGCAGAAACAATTTGACGCCTATCATTCGGCAGTTTTTTAA 141583 | | | ||| ||||||||||||||| | || || | ||||||| || ||| |||| Sbjct 181541 TCATTGCAGATGGATTCCATGCAGATAAGATATGTCTTCTATCATAAGGATTTTTCTTAA 181482 Query 141584 TACGATCAA-TAACTTCTATAATTTGGTCTACACC 141617 |||| ||| || |||| ||| ||||| || Sbjct 181481 GTGATTCAATTAAATTTGATAA-TTGATCTACTCC 181448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534196550338040