Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq79 127 2e-24 seq240 125 6e-24 seq141 91.5 1e-13 >seq79 Length=45460 Score = 127 bits (140), Expect = 2e-24 Identities = 383/584 (66%), Gaps = 33/584 (6%) Strand=Plus/Minus Query 19360 TATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA-- 19417 ||||| || || || ||| |||||||||||||| ||| || | ||| || | | Sbjct 33590 TATGGTCCTCCAGGAACTGGTAAAACATTAATTGCAAGACAAATAGCAAAAGTATTGAAA 33531 Query 19418 -CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA 19476 ||| | |||| || ||||| ||||| || || || || ||||||||||| || ||| Sbjct 33530 GCAAGAGAACCA---AAGATTGTGAATGGACCAGAGATATTGAATAAATATGTTGGGCAA 33474 Query 19477 TCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGG 19536 ||||||||| ||||| | | ||| ||| ||||| |||||| | | || ||| Sbjct 33473 AGTGAAGAAAATATACGAAATCTTTTTTATGAAGCTGAGGAAGAATATAGACAAAAAGG- 33415 Query 19537 CGCAAAAGTTCTTTG-----CACATTATAATACTAGATGAATTGGACGCAATCTGT--AA 19589 | | || | || |||||||| || |||||||| | || ||||| ||| || Sbjct 33414 ----AGATTTTTCTGCACTTCACATTATTATTTTAGATGAAATAGATGCAATATGTAAAA 33359 Query 19590 GC-------AAAGAGGTTCTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCC 19642 || ||| | || || || || ||| | | |||| |||||||| Sbjct 33358 GCCGTGGTACAAGTAATAGTGTTGGGTCAGGTGTCAGTGATAGTATTGTTAATCAACTTT 33299 Query 19643 T--GTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAA 19700 | || || ||| || |||||||| | |||||||||||| ||||||| ||||| || Sbjct 33298 TAAGT-AAGATT-GATGGTGTTAATAGTATTAATAATATTTTACTTATTGGTATGACAAA 33241 Query 19701 TAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGA 19760 ||| || || || ||||| || |||||| |||| || | || ||| | | || || Sbjct 33240 TAGGCTTGATTTGATAGATGAGGCATTATTAAGACCTGGAAGATTTGAAGTTCATATTGA 33181 Query 19761 AATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATAC--ATCAACC 19818 |||| ||||| || || |||| | ||||| ||| | || ||||| | ||| Sbjct 33180 AATTGGATTACCAAATAAAAGTGGTAGACATGAAATATTAGAAATTCATACGAAGCAA-- 33123 Query 19819 ATGCGACAAAATAACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACC 19878 ||| || ||||| | | |||| | |||||| | || ||| | |||| || Sbjct 33122 ATGAGAGAAAATCATCGTTTAGCAGCTGATGTATGTTTATTAGAGTTAGCAGATAAAACT 33063 Query 19879 AAAAACTATAGCGGCGCAGAACTTGAGGGATTAGTGAGGGCCGC 19922 || || | | || ||||| |||| |||||| | || || || Sbjct 33062 AAGAATTTTTCAGGTGCAGAGATTGAAGGATTAATTAGAGCTGC 33019 >seq240 Length=77866 Score = 125 bits (138), Expect = 6e-24 Identities = 340/514 (66%), Gaps = 10/514 (2%) Strand=Plus/Plus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || ||| |||||||||||||| | | || ||||||||||| |||||||| | ||||| Sbjct 77355 ATGTGGTCAATGTACAAAAAAGAAGAAGCCTCATTTTGGACTGCAGAAGAGATAGATTTA 77414 Query 43790 ACTAAAGACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTG 43849 | | ||| | | ||||| ||||| || ||||||||||||||| | Sbjct 77415 GGTCAGGACATGAGAGATTGGGAAAGTTTAAAGGAACCAGAAAAACATTTTATTAAATAT 77474 Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 || || || |||||||| || || || || || || | || || || | | || ||| Sbjct 77475 GTCTTAGCATTTTTTGCAGCTAGTGATGGAATTGTAATGGAGAACTTAGCT-GTAAATTT 77533 Query 43910 GCGCAAGAAG-TTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGA 43968 ||| || ||||| || |||||| || | |||||| ||||||||||| || || Sbjct 77534 TTTAAAGGAGATTCAAATAGAAGAAGCTAGAATGTATTATGGATTTCAAATTGCTATGGA 77593 Query 43969 AAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGA 44028 | ||||| |||| || ||| | || ||| || || ||||| | || Sbjct 77594 GCAGATTCACAGTGAAACTTATTCCCTTTTAATTGATCAATATATATCAGATGTAAAAGA 77653 Query 44029 GAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTG 44088 || | ||| | || ||| | |||| || ||||| ||| ||||| || Sbjct 77654 TCGCCAAATGCTTTTTGAAGCAATATCACATTTACCAGCAGTTAAAACTAAGGCAGAATG 77713 Query 44089 GGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACG---ACTTGTCGCGTTTGC 44145 ||| || ||||| ||| ||| || |||| |||| | | ||| | | ||| Sbjct 77714 GGCAACAAAGTGGATGAATAATAATCGGTCATTTGCAGAAAGAGTAATTGGCTTTTGTGC 77773 Query 44146 AGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGGCCATATTTTGGTTAAAGAAAC 44204 |||| ||||| || || ||||| || | | |||| || ||||||||| | ||||||| Sbjct 77774 AGTT---GAAGGTATCTTGTTTTCTGGCAGCTTTTG-TGCTATATTTTGGCTTAAGAAAC 77829 Query 44205 GAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 | || || |||||||| || || ||||| ||||| Sbjct 77830 GTGGATTAATGCCTGGATTAACATTTTCTAATGA 77863 >seq141 Length=3141 Score = 91.5 bits (100), Expect = 1e-13 Identities = 250/375 (67%), Gaps = 15/375 (4%) Strand=Plus/Plus Query 44203 ACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTT 44262 ||| || || |||||||| || || ||||| ||||| ||||| | | |||||||| | Sbjct 1 ACGTGGATTAATGCCTGGATTAACATTTTCTAATGAACTAATATCTAGAGATGAAGGTAT 60 Query 44263 ACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGC--CTTC-ATG 44319 ||| || |||| || || |||| ||| | | |||| | |||| ||| Sbjct 61 TCATGCGGACTTTGGATGTTT---ACTT---TATAAAACATTAAATAATCGTCTTCCATG 114 Query 44320 TAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTT--ATGACA 44377 | | | | || ||| ||| | | ||| || || | | |||| |||| ||| | Sbjct 115 TGAAAGAGTTCAAGAAATTATAGCAGAAGCTGTTGAAGTTGAACGTACATTTTTATGTGA 174 Query 44378 ACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAA 44437 ||||||||||| || | || || |||||| || ||| ||||||||||||| Sbjct 175 TT--CATTACCTGTAGATCTCATTGGGATGAATTCTAGATTAATGGCCCAATATATTGAA 232 Query 44438 TACATTGCAGATCGTTTACTTTTGGAACTGGGT-TGCGATAAACACTATATTGTACAAAA 44496 | |||| ||||||||||| || | ||| | | | | | || || | ||| || Sbjct 233 TTTGTTGCTGATCGTTTACTGTTTGCACTAGATGTTCCA-AAGTTATACAATGTCACGAA 291 Query 44497 CCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACG 44556 || ||||||| ||||| |||||| || |||| ||||| ||||||||||| ||||| Sbjct 292 TCCATTTGATTGGATGGATCTTATTTCATTACAAGGTAAAACTAACTTTTTTGAGAAACG 351 Query 44557 CGTTGGAGAATATCA 44571 || | ||||| || Sbjct 352 AGTAGCTGAATACCA 366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454658213385