Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_027983.1 Length=167435 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 5e-14 >seq2 Length=183582 Score = 93.3 bits (102), Expect = 5e-14 Identities = 200/289 (69%), Gaps = 14/289 (5%) Strand=Plus/Minus Query 141646 TTTACATTGTTCTACGTGATTCATATAGATATGAGTATTACCGCCAGAAAATATCAAATC 141705 |||| |||| || || ||||| ||| ||||||| || ||| | || ||| || || Sbjct 181779 TTTA-ATTGCTCAACATGATTTTCATAAATATGAGCATCACCAATAAAATGTATAAATTC 181721 Query 141706 TCCAGGAATAAGATT-ACACATCTTAGCTACAATATGAACTAACGCAGCATATGATGCAA 141764 |||||| | | || ||| || | ||| | ||| | ||| | ||| ||||||| Sbjct 181720 TCCAGGT-TCATATCCACATATATGAGCAATCATAACACATAATAATGAATAAGATGCAA 181662 Query 141765 TATTAAATGGAAGGCCGAGA---AAAACATCTACTGATCGTTGATACCACT-GCAAATCT 141820 ||||||||||| || | | ||| || | ||| || |||||| | |||| | | Sbjct 181661 TATTAAATGGACATCCTAAACCTAAATCA-CAACT--TCTTTGATATAATGAGCAACT-T 181606 Query 141821 AA---ATAGCCATTACGCACATTAAACTGATAGAACATATGACAAGGCGGTAATGCCATA 141877 || || |||| |||| ||| ||| | || ||||||||||| |||||||||||| Sbjct 181605 AATCTATTATTATTATCAACATAAAATTGAGATAATATATGACAAGGTGGTAATGCCATA 181546 Query 141878 TATTTAAGTTCAGCTGGATTCCACGCAGAAACAATTTGACGCCTATCAT 141926 ||||| | | ||| ||||||||| ||||| | || || | ||||||| Sbjct 181545 TATTTCATTGCAGATGGATTCCATGCAGATAAGATATGTCTTCTATCAT 181497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535662145263400