Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq46 118 1e-21 seq199 82.4 1e-10 >seq46 Length=25720 Score = 118 bits (130), Expect = 1e-21 Identities = 450/698 (64%), Gaps = 9/698 (1%) Strand=Plus/Plus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 || || |||| || |||||||||||| ||||||||| || | | || | || || Sbjct 3237 TATATATTTGAGGTAAATGGTTCAAAGCTTTCATTATTCCCTAGTAACTGAGATGTAGAT 3296 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827 || || |||||||| || | ||| | ||| | ||| || | || || ||| Sbjct 3297 GCGGTAGGCATTGGAGCTACCAACAACGAGTTTCTAAGGCCATACTTAGCTATTTTCTCC 3356 Query 110828 TTGAGAACATCCCAGT--CGTAGT--TGAGCTTGGTTTCACCTTCCCACATGTCAAACTG 110883 || || | |||||||| | ||| |||| |||| ||| || ||| | ||||| || Sbjct 3357 TTCAGTAAATCCCAGTTCCAAAGTCCTGAGGAGGGTTGCACATT-CCAGAGATCAAATTG 3415 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 |||| ||| || || ||||| | ||| |||||||||| ||| | || || Sbjct 3416 TAGCAGACCTCTACTAGCTGGTGAACCTTGAAATGTTTCATAGGGACCATACTTCTCTGC 3475 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 | ||||| || || || || | || | || || || ||||| || | |||| | Sbjct 3476 TAGCTCACAACTTGCATCAAGAGCAGCATAGTATATTGTCTCAAATATCTCAACATTTAG 3535 Query 111004 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 111063 | | |||| || | || ||| ||| || | | | ||||| ||| || ||||| Sbjct 3536 TTTCCTGGCATCTTTAGATTCATATGGATATCTCAATATCATAAAACAATCTGCAAGACC 3595 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT-CAACGG 111122 ||| || || ||||||| || || |||| || ||||||| || ||| ||| || | Sbjct 3596 TTGTACTCCTAAACCAAGTGGCCTATGTCTCAGATTAGAC-CTCCTGCACTCTGGAATAG 3654 Query 111123 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCAT 111182 ||||| | | ||||| ||| |||||||| | || | | |||| | ||||| Sbjct 3655 GATAATATCCACGATCAATAACTTCATTTAGATTCCTTGTTGCTACCTTTACTACTTCAT 3714 Query 111183 GAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTG 111242 || |||| | |||| || | | | || || ||| | || || | || | Sbjct 3715 ATAGCTTTTTAAAATCGAATTTCTTATTATCCCTATCAACAAAACGAGGGAGCCCTATAG 3774 Query 111243 ATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT-GTGTACTCTAAAATTTCTGTACAT 111301 ||||||| || ||||| || ||| | | | || || ||||| | ||||||||||||| Sbjct 3775 ATGCCAAGTTACAAACTGCGACCTCGT-TTGAACTAGTATACTCCATAATTTCTGTACAT 3833 Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361 | ||| | || ||||| |||| ||| | ||| || || || || |||||| Sbjct 3834 AGATTGCTAGATTTTATCGTACCCAGATTTTGTTGATTGCTTTTACGATTAGCTGCATCC 3893 Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399 || ||| || | || || || ||||| | ||||| Sbjct 3894 TTATAGCAAATAAATGGAGTACCTGTCTCAATTTGTGA 3931 >seq199 Length=54927 Score = 82.4 bits (90), Expect = 1e-10 Identities = 154/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 181828 TACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTGTTTGAACCTGTATAGTCGTTGG 181887 ||||||||||||||||||||| ||| | ||| | ||||| || | | || | | Sbjct 24404 TACCAAATTGACCACATGGCTGAAGTAAGTTCAAATTGTTACTTCCAACAAAATCTTGCG 24345 Query 181888 CCAACTTAACGATGGTA-TCCGCAAGGGACACTTCACCGTGGTGGTAAGCTGACT-TG-T 181944 ||| || || || ||| || | || || ||||||| || ||||| || ||| || | Sbjct 24344 CCATATTTACAATCGTACTCTGTAA-AGAAGCTTCACCATGATGGTATGC--ACTATGTT 24288 Query 181945 CCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATCTTTGAGGTTCTTGTGGAAGC 182004 | |||||||| | || || ||||| || |||||||||| || || ||||| | || Sbjct 24287 CAGCAACATAACCAGCTAATTGTGCTACTTTCATTTCATTATTCAGCTTCTTTTTAAACA 24228 Query 182005 AAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATC 182044 || ||| | |||||||| || |||||| | ||||| Sbjct 24227 CAGAATATAAAACTTTCCTTTGTCCAGGCTTTAATCCATC 24188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029825439200