Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq240 156 4e-33 >seq240 Length=77866 Score = 156 bits (172), Expect = 4e-33 Identities = 355/526 (67%), Gaps = 25/526 (5%) Strand=Plus/Minus Query 4587 AGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCG 4646 ||||| |||||||| |||||||| |||||||| || | || ||||||||||||||||| Sbjct 77866 AGTTCATTAGAAAATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAGCA 77807 Query 4647 GCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCG 4706 ||| |||||||| || || ||||| || || ||| | | || || | Sbjct 77806 CAAAAGCTGCCAGAAAACAAGATACCTTCAACTGCACAAAAGCCAATTACTCTTTCTGCA 77747 Query 4707 AACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAAC-GCA 4765 || || | || | || ||||| ||| |||||| | || || | ||||| || Sbjct 77746 AATGACCGA---TTATTATTCATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCT 77690 Query 4766 CGGAATTGTGTATATAGCGTTAAATA--ATTT----ACTTTTTTCAAATGGGTCTTGAAT 4819 | || |||| |||| || | ||| | |||| | |||| || ||| || Sbjct 77689 GGTAAATGTG-ATATTGCTTCAAAAAGCATTTGGCGATCTTTTACA------TCTGATAT 77637 Query 4820 ATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAA 4879 ||| || |||| ||| ||| ||||| || || | || |||||||| ||||| Sbjct 77636 ATATTGATCAATTAAAAGGGAATAAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAA 77577 Query 4880 TCCGTAAAAGCATCTAGCTTCTGTTACTTGAA-CTTCGTTACAAAATCTTTCTACTAAGT 4938 ||| ||| | |||||||||| || ||||| || | ||| ||||| || | |||||| Sbjct 77576 TCCATAATACATTCTAGCTTCTTCTATTTGAATCTCCTTTAAAAAAT-TTACAGCTAAGT 77518 Query 4939 TTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACT 4998 | || |||| || || ||||| ||||||||||| || || |||| || ||| | | Sbjct 77517 TCTCCATTACAATTCCATCACTAGCTGCAAAAAATGCTAAGACAT---ATTTAATAAAAT 77461 Query 4999 GTTCGTCAGG---CTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTT 5055 ||| || || ||| | ||| ||| | || || | | |||||| | |||| Sbjct 77460 GTTTTTCTGGTTCCTTTAAACTTTCCCAATCTCTCATGTCCTGACCTAAATCTATCTCTT 77401 Query 5056 CAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAAT 5101 | |||||||||| || ||||| ||||||||||||| ||||| || Sbjct 77400 CTGCAGTCCAAAATGAGGCTTCTTCTTTTTTGTACATTGACCACAT 77355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427048158307241