Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq46 412 5e-110 seq240 167 3e-36 seq141 120 4e-22 >seq46 Length=25720 Score = 412 bits (456), Expect = 5e-110 Identities = 1244/1904 (65%), Gaps = 53/1904 (3%) Strand=Plus/Plus Query 76780 ATGTAAACTGAATTGGAGAAGAT-----GCGGGTTTTGTACGTAGATAGTACATACCAGT 76834 || || | ||||||| | | ||| ||| || ||| | || ||||| |||||| Sbjct 2852 ATCTATAGTGAATTGTATAGGATTTGCAGCGCTTTGTGTTCTTAAGTAGTAAGCACCAGT 2911 Query 76835 TTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATC 76894 ||||| |||| ||||||| ||||| ||||| | || || | ||| | | || Sbjct 2912 TTTTAAACCCTTCTTCCATCCATAGAAGTGCATAGAAGATAGCTTTGCATAGTTGGCATT 2971 Query 76895 GGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCAT 76954 || |||| |||||| | |||||| |||| ||| | | ||||||||| |||||||| Sbjct 2972 TGCAATATAAATATTTAGAGACTGAGATTGACAAATGTATGGTCCTCTATCTGCCGCCAT 3031 Query 76955 TTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATC 77014 | |||| | ||||| ||||||||| | |||||| | | | | | | ||| Sbjct 3032 ATCAATAACTGCTTTTTGTCTAATTTCCCAGACGGTTTTGTACA---GGTCGCGAATATC 3088 Query 77015 TGGAAGGTTTG------TATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTAT 77068 | | | | | ||||||||| || |||| || || | || || || | | Sbjct 3089 TCGCGGTATAGACTCAATATTTTGAAC---ACTTCCAT-TGTTAGCAATG-ATACTCTGT 3143 Query 77069 ATCA-----TCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACT 77123 ||| |||| ||| | | | || |||| | | | | ||||||||| || Sbjct 3144 TTCAGTCTCTCATCCCATAGTCCCAATTCAAGTAAATCATTCAACAAATGAGGATTCACA 3203 Query 77124 ATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACA 77183 | || || ||||||||||| | | | || ||||| |||| ||||||| | Sbjct 3204 ACAAAGAACTCCCCAGACAATACACGCCTATGATATATATTTGAGGTAAATGGTTCAAAG 3263 Query 77184 GATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAA 77243 |||||| || || | | |||| ||||| || || ||||| || || ||||| || Sbjct 3264 CTTTCATTATTCCCTAGTAACTGAGATGTAGATGCGGTAGGCATTGGAGCTACCAACAAC 3323 Query 77244 CTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCT 77303 ||||| || |||| | ||||| || || || | | ||| | |||||| || Sbjct 3324 GAGTTTCTAAGGCCATACTTAGCTATTTTCTCCTTCAGTAAATCCCAGTTCCAAAGTCCT 3383 Query 77304 GAAG---GTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCA 77360 || | || |||| ||| ||||| ||||||| | || ||||||| ||| || Sbjct 3384 GAGGAGGGTTGCACATTCCAGAGATCAAATTGTAGCAGACCTCTACTAGCTGGTGAACCT 3443 Query 77361 TTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCG 77420 | | |||||||||| || || | | || ||||| |||||||| || || | || | Sbjct 3444 TGAAATGTTTCATAGGGACCATACTTCTCTGCTAGCTCACAACTTGCATCAAGAGCAGCA 3503 Query 77421 TAATAAATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCAATACTATCAAACGG 77479 || || ||||| || || |||| ||| || | | || || || || ||| | || Sbjct 3504 TAGTATATTGTCTCAAATATCTCAACATTTAGTTTCCTG-GCATCTTTAGATTCATATGG 3562 Query 77480 ATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATG 77539 ||| || | ||||| |||||| | || || ||||| | ||||| || ||||| Sbjct 3563 ATATCTCAATATCATAAAACAATCTGCAAGACCTTGTACTCCTAAACCAAGTGGCCTATG 3622 Query 77540 TCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATT 77599 |||| ||| || | | ||||||||||||||||| | || |||| || ||| Sbjct 3623 TCTCAGATTAGACCTCCTGCACTCTGGAATAGGATAATATCCACGATCAATAACTTCATT 3682 Query 77600 GAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCAT- 77658 ||||| || |||| || || || || | ||| || |||||| ||| | || Sbjct 3683 TAGATTCCTTGTTGCTACCTTTACTACTTCATATAGCTTTTTAAAATCGAATTTCTTATT 3742 Query 77659 ----CTAT-AACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATT 77713 |||| |||||| | |||||||||| | ||||||||||| ||||| || Sbjct 3743 ATCCCTATCAACAAAACGAGGGAGCCCTATAGATGCCAAGTTACAAACTGCGACCTCGTT 3802 Query 77714 AGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATT 77773 | | | ||| | || || || ||||||||||| ||| |||| || || |||||||| Sbjct 3803 TGAACTAGTATACTCCATAATTTCTGTACATAGATTGCTAGATTTTATCGTACCCAGATT 3862 Query 77774 TTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTC 77833 |||||| ||||| || ||| || |||||||| |||||| ||||| || || || Sbjct 3863 TTGTTGATTGCTTTTACGATTAGCTGCATCCTTATAGCAAATAAATGGAGTACCTGTCTC 3922 Query 77834 AATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTT----TATCATAGATTTG- 77888 ||| ||||| | ||| | || || || | |||| | | || | ||| Sbjct 3923 AATTTGTGACTG-----TAGCAATGCAAACCACA--AACTTTGTGCTTTAATTGTTTTCC 3975 Query 77889 TATCGCCTC--TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACAT 77946 || ||| | ||| ||||||| || ||||| || ||||| || ||||| |||| Sbjct 3976 TACCGCGACCTTCTTTTTCATAGTGTTCATATAATTCTTTAAATTGGTCACCCCAGACAT 4035 Query 77947 CATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTC 78006 | | || ||||||||||||| || ||||| |||| ||||| |||| | || |||| Sbjct 4036 CTTGCATCCCAGGGCATTCATCAGGACACATTAATGTCCAGTTTGCATCCTTCTCTACTC 4095 Query 78007 GTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTT 78066 | ||| || ||||||||||||||||| || ||||| ||| ||| ||| || | Sbjct 4096 TCTCCATGAACAGATCAGGTATCCATAGTGCTGGAAATATATCACGGCATCTCATCTCCT 4155 Query 78067 CATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTA 78126 | || || ||||| | | || | ||| |||| || ||| | |||||| ||||| | Sbjct 4156 CTTTACCATGGTTCTTCCTTATCTCTATAAATTCCAAAACATCCGCATGCCAAGGTTCCA 4215 Query 78127 GATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGT 78186 ||| | || | | || | ||| || || || || | ||| | || || | Sbjct 4216 AATAGACAGCAAGTGCACCCTTCCTTTTTCCTCCACCTTGGTCAACATAACGTGCTGTAT 4275 Query 78187 TATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATAT 78246 |||||| || | || ||||||||| | ||| ||||| | ||||| || ||| || | Sbjct 4276 CATTATACACACGCAGCATTGGAATTAAACCATTAGACCTACCATTAGTACCACGGATGT 4335 Query 78247 AACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATA 78306 | ||| || || |||||| || | | ||||| ||| || || |||| || Sbjct 4336 ATGATCCTGCAGCTCGTATATTAGAAACAGCCACCCCTAATCCACCAGCAGTCTTGCTTA 4395 Query 78307 TTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAA 78366 | || || || | |||||| | || || || || |||||| ||| || | Sbjct 4396 TATTTGCACATTTCTTTAGTGTATCAAAAATGCCATCAATTGAGTCATCTGACATTTTGA 4455 Query 78367 GAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATG 78426 ||| |||||| ||||| || | ||| ||| || ||||| ||||||||||||| | Sbjct 4456 GAATAAAACAAGAGGACATCTGTGGGCGAAGAGTACCAGCATTGAATAATGTCGGAGTAG 4515 Query 78427 CATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTAT-GTCC 78485 |||| ||||| | || | ||| || || | || |||||||| |||| ||||| | | Sbjct 4516 CATGAGTAAAATACTTCTGAGAGAGCAGTTCATAAGTTTCAATTGCTGCATCTATATTAC 4575 Query 78486 CATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTA 78545 ||| | || || || | || | ||| || | || || || ||||| || ||||| Sbjct 4576 CATAG-TGGATACCACAGGAGACTCTCATTAATAGGTGTTGTGGCCTTTCCACAATCTTA 4634 Query 78546 TTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 78605 | || | || || || ||| |||| | ||| |||||| ||||||||| ||| | Sbjct 4635 TCATCGACCCGCAGTAAATAAGATCTTTCTAGAGTCTTAAAAGCAAAATAGTCATATTCA 4694 Query 78606 AAGTCTCTCTCGTAAAT-AATAACAGAATTTAGTTTATCTTTGT 78648 || || | | |||| |||||| || |||| | ||||||||| Sbjct 4695 AAATCAC-GGCTAAAATCAATAACTGAGTTTAATCTATCTTTGT 4737 >seq240 Length=77866 Score = 167 bits (184), Expect = 3e-36 Identities = 348/509 (68%), Gaps = 16/509 (3%) Strand=Plus/Minus Query 48182 TTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGC 48241 ||| ||||||||||| | || ||||||| ||||||||| || ||||||||||| || | Sbjct 77864 TTCATTAGAAAATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAGCA-C 77806 Query 48242 GAAAGAT-CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGT-CTCTCTCCG 48299 |||| | |||||||| || || ||||| || || |||| || || | |||| || | Sbjct 77805 AAAAGCTGCCAGAAAACAAGATACCTTCAACTGCA-CAAAAGCC--AATTACTCTTTCTG 77749 Query 48300 TAACTGGCT--TCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAG 48357 || || | | || | |||||| | |||||| || ||||| | || || | Sbjct 77748 CAAATGACCGATTATTATTCATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTG 77689 Query 48358 GCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTAT 48417 | | | ||| || | ||| || | | || || |||| | || || Sbjct 77688 GTAAATGTGATATTGCTTCAAAAAGCATTTGGCGATCTTTTACATCTGATATATATTGAT 77629 Query 48418 CTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAA 48477 | |||||||| ||| |||| |||||| | || || || || |||||||| ||| Sbjct 77628 CAATTAAAAGGGAATAAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATAAT 77569 Query 48478 AACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTA 48537 | ||| |||||| || || | |||| | |||| | |||| || ||||| ||| Sbjct 77568 ACATTCTAGCTTCTTCTATTTGAATCTCCTTTAAAAAATTTACAGCTAAGTTCTCCATTA 77509 Query 48538 CTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGG 48597 | |||||||||||||| |||||||||||||| |||| ||||||||||| |||||| ||| Sbjct 77508 CAATTCCATCACTAGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTC--TGG 77451 Query 48598 AAGTCAGTT----TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTC 48653 || || | | ||| || | || || | || ||||| ||||| || ||| Sbjct 77450 --TTCCTTTAAACTTTCCCAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTC 77393 Query 48654 CAAAATGATGCCTCTGCTTTTTTATACAT 48682 |||||||| || ||| ||||||| ||||| Sbjct 77392 CAAAATGAGGCTTCTTCTTTTTTGTACAT 77364 >seq141 Length=3141 Score = 120 bits (132), Expect = 4e-22 Identities = 298/442 (67%), Gaps = 19/442 (4%) Strand=Plus/Minus Query 47788 TGGTTCTTTAAAAGTCAACATCTAAA--GAAAAATGATTATCTTCT--TGAGACATAACT 47843 ||||| |||||| ||| |||||| | ||||| | | | |||| |||| ||||||| Sbjct 434 TGGTTAGTTAAAATTCAGCATCTAGATTGAAAATTTGGTCT-TTCTGATGAGCCATAACT 376 Query 47844 CCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGAT 47903 || |||| |||||| | || |||||||| ||||| |||||||| |||| ||||| Sbjct 375 CCTGCCATTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAA 316 Query 47904 ATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCT 47963 ||| ||||| ||||||||||||| |||| || | ||| || ||| | Sbjct 315 ATAAGATCCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTA---GT 259 Query 47964 GAAATCAGT---CTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATT 48020 | || |||| | ||| ||||| ||||| |||||| ||| | | | ||||||| Sbjct 258 GCAAACAGTAAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATC 199 Query 48021 CCTATAAGTTTAACTGGTAGAGCCTC-CGTAAGAAACTCTTGTTCGATAGTGACAGCATC 48079 || || || | || |||| | || | ||| ||| |||| | ||||| || Sbjct 198 CCAATGAGATCTACAGGTAATGAATCACATAA-AAATGTACGTTCAACTTCAACAGCTTC 140 Query 48080 CACTATTATCGATGTTACCGTTTCCTCACTTGGTGGA--TACAACAAATG-TTTAAACAT 48136 |||| || | || || |||| ||| || | |||| |||| | | Sbjct 139 TGCTATAATTTCTTGAACTCTT---TCACATGGAAGACGATTATTTAATGTTTTATAAAG 83 Query 48137 TAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 48196 ||||||| |||| || ||||| ||||||||||||| |||| ||| ||||||||||| Sbjct 82 TAAACATCCAAAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGT 23 Query 48197 GAGACCGGGCATTAGTCCACGT 48218 | || ||||||| ||||||| Sbjct 22 TAATCCAGGCATTAATCCACGT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694666394709280