Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq46 408 6e-109 seq240 167 3e-36 seq141 141 1e-28 >seq46 Length=25720 Score = 408 bits (452), Expect = 6e-109 Identities = 1217/1853 (66%), Gaps = 36/1853 (2%) Strand=Plus/Plus Query 75403 TTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCAT 75462 || ||| | || ||||| ||||||||||| |||| ||||||| ||||| ||||| Sbjct 2885 TTGTGTTCTTAAGTAGTAAGCACCAGTTTTTAAACCCTTCTTCCATCCATAGAAGTGCAT 2944 Query 75463 GCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATC 75522 | ||| || | ||| | | || || |||| |||||| | |||||| |||| Sbjct 2945 AGAAGATAGCTTTGCATAGTTGGCATTTGCAATATAAATATTTAGAGACTGAGATTGACA 3004 Query 75523 GATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAAT 75582 ||| | | ||||||||| |||||||| | |||| | ||||| ||||||||| | Sbjct 3005 AATGTATGGTCCTCTATCTGCCGCCATATCAATAACTGCTTTTTGTCTAATTTCCCAGAC 3064 Query 75583 AGTTTTGAAAACTTGTTTGATATCATCTGGAAGA---TTTGTATTTTGAATGGATCCGCC 75639 |||||| | | | ||||| || | | | ||||||||| ||| Sbjct 3065 GGTTTTGTACAGGTCGCGAATATCTCGCGGTATAGACTCAATATTTTGAACACTTCCATT 3124 Query 75640 ATCAGATATAATTGTATTCTTGA-TCTCATCATTCCACAATTTTCTCTCGGTTAAAACTC 75698 | || || || | | || | |||| |||| ||| | | || |||| | Sbjct 3125 GTTAGCAATGATACTCTGTTTCAGTCTC-TCATCCCATAGTCCCAATTCAAGTAAATCAT 3183 Query 75699 TAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATAT 75758 | | | ||||||||| |||| || || ||||||||||| | | | || |||| Sbjct 3184 TCAACAAATGAGGATTCACAACAAAGAACTCCCCAGACAATACACGCCTATGATATATAT 3243 Query 75759 TACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCG 75818 | |||| ||||||| | |||||| || || | | |||| || || || || | Sbjct 3244 TTGAGGTAAATGGTTCAAAGCTTTCATTATTCCCTAGTAACTGAGATGTAGATGCGGTAG 3303 Query 75819 GCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGAT 75878 |||| || || ||||| || ||||| || |||| | ||||| || || || Sbjct 3304 GCATTGGAGCTACCAACAACGAGTTTCTAAGGCCATACTTAGCTATTTTCTCCTTCAGTA 3363 Query 75879 ATTTCCAATCCCAAAGATCTGATG---GTACAACATCCCAGAGATCGTATTGTAGAATTC 75935 | | ||| | |||||| |||| | || |||| ||||||||| ||||||| | | Sbjct 3364 AATCCCAGTTCCAAAGTCCTGAGGAGGGTTGCACATTCCAGAGATCAAATTGTAGCAGAC 3423 Query 75936 CGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGC 75995 | | ||||| ||| || | | ||||||| || | || | ||| || ||||| || | Sbjct 3424 CTCTACTAGCTGGTGAACCTTGAAATGTTTCATAGGGACCATACTTCTCTGCTAGCTCAC 3483 Query 75996 AACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGAT-CTTGC 76054 |||| || || | ||| | || || ||||| || || |||| ||| || | | || Sbjct 3484 AACTTGCATCAAGAGCAGCATAGTATATTGTCTCAAATATCTCAACATTTAGTTTCCTG- 3542 Query 76055 GCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACT 76114 || || | ||| | ||||| || | ||||| |||||| || || || ||| Sbjct 3543 GCATCTTTAGATTCATATGGATATCTCAATATCATAAAACAATCTGCAAGACCTTGTACT 3602 Query 76115 CCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCT-TCTGGAATAGGGTAATA 76173 || | ||||| || ||||||||| ||| || | | || ||||||||||| ||||| Sbjct 3603 CCTAAACCAAGTGGCCTATGTCTCAGATTAGACCTC-CTGCACTCTGGAATAGGATAATA 3661 Query 76174 ATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTT 76233 | ||| |||| || ||| ||||| || |||| || || || || | ||| || Sbjct 3662 TCCACGATCAATAACTTCATTTAGATTCCTTGTTGCTACCTTTACTACTTCATATAGCTT 3721 Query 76234 GAGAAAATCAAATTTTCCAT-----CTATCA-CAAACATATTAAGAGCTATAGATGCTAG 76287 |||||| ||||| || |||||| |||| | || |||||||||| | Sbjct 3722 TTTAAAATCGAATTTCTTATTATCCCTATCAACAAAACGAGGGAGCCCTATAGATGCCAA 3781 Query 76288 ATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACT 76347 |||||||| || ||||| || | | | | ||| | || || || || |||||||| || Sbjct 3782 GTTACAAACTGCGACCTCGTTTGAACTAGTATACTCCATAATTTCTGTACATAGATTGCT 3841 Query 76348 ACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAG 76407 | | || || || || ||||||||||| ||||| || ||| || |||||||| Sbjct 3842 AGATTTTATCGTACCCAGATTTTGTTGATTGCTTTTACGATTAGCTGCATCCTTATAGCA 3901 Query 76408 AACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTA-G 76466 || ||| ||||| || || ||||| ||||| | | | | ||| | ||| | | Sbjct 3902 AATAAATGGAGTACCTGTCTCAATTTGTGACTGTAGCAATGCAAACCACAA-ACTTTGTG 3960 Query 76467 CTTTTATTATAGATTTGTATCGCTTC--TCTCTTTCATATTGTGTATATAACCGTTCAAA 76524 |||| ||| | || || ||| | ||| ||||||| ||| |||||| || ||| Sbjct 3961 CTTTAATTGTT--TTCCTACCGCGACCTTCTTTTTCATAGTGTTCATATAATTCTTTAAA 4018 Query 76525 TTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTC 76584 || || ||||| ||||| | || ||||| ||||||| |||||||| |||| ||| | Sbjct 4019 TTGGTCACCCCAGACATCTTGCATCCCAGGGCATTCATCAGGACACATTAATGTCCAGTT 4078 Query 76585 ACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATC 76644 |||| | || || | | ||| || ||||||||||||||||| || ||||| ||| Sbjct 4079 TGCATCCTTCTCTACTCTCTCCATGAACAGATCAGGTATCCATAGTGCTGGAAATATATC 4138 Query 76645 TCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATC 76704 ||| ||| || || || || ||||| | | |||| || |||| || ||| Sbjct 4139 ACGGCATCTCATCTCCTCTTTACCATGGTTCTTCCTTATCTCTATAAATTCCAAAACATC 4198 Query 76705 AGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATC 76764 | |||||| ||||| | ||| | || | ||||| | ||| || || || || Sbjct 4199 CGCATGCCAAGGTTCCAAATAGACAGCAAGTGCACCCTTCCTTTTTCCTCCACCTTGGTC 4258 Query 76765 TATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACC 76824 | ||| | || || | |||||| || | || ||||||||| | || ||||| |||| Sbjct 4259 AACATAACGTGCTGTATCATTATACACACGCAGCATTGGAATTAAACCATTAGACCTACC 4318 Query 76825 ATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCC 76884 ||| || ||| || || ||| || || |||||| || || | |||| ||| Sbjct 4319 ATTAGTACCACGGATGTATGATCCTGCAGCTCGTATATTAGAAACAGCCACCCCTAATCC 4378 Query 76885 TCCTGCCATTTTAGAGATTAGA---GCACAGCGTTTCAATGTGTCATAGATGCCCTCTAT 76941 || || | || | ||| | ||||| || | ||| ||| | ||||| || || Sbjct 4379 ACCAGCAGTCTT---GCTTATATTTGCACATTTCTTTAGTGTATCAAAAATGCCATCAAT 4435 Query 76942 ACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGC 77001 ||||| ||| || |||| |||||| ||||| || | ||| ||| || || Sbjct 4436 TGAGTCATCTGACATTTTGAGAATAAAACAAGAGGACATCTGTGGGCGAAGAGTACCAGC 4495 Query 77002 ATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTC 77061 ||| || ||||| |||| |||||||| || | || | ||| || || | || ||||| Sbjct 4496 ATTGAATAATGTCGGAGTAGCATGAGTAAAATACTTCTGAGAGAGCAGTTCATAAGTTTC 4555 Query 77062 AATAACTGCTTCTATA-TCCCATTGATGAATTCCTACA-GCGACACGCATCAACATATGC 77119 ||| |||| |||||| | |||| | || || || ||| | ||| | ||| || | || Sbjct 4556 AATTGCTGCATCTATATTACCATAG-TGGATACC-ACAGGAGACTCTCATTAATAGGTGT 4613 Query 77120 TGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTA 77179 || || | ||| ||| |||||| || | || || || ||| |||| | ||| ||| Sbjct 4614 TGTGGCCTTTCCACAATCTTATCATCGACCCGCAGTAAATAAGATCTTTCTAGAGTCTTA 4673 Query 77180 AAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAAT-AATAACCGAATTTA 77231 ||| ||||||||| ||| ||| || | | |||| |||||| || |||| Sbjct 4674 AAAGCAAAATAGTCATATTCAAAATCAC-GGCTAAAATCAATAACTGAGTTTA 4725 >seq240 Length=77866 Score = 167 bits (184), Expect = 3e-36 Identities = 353/513 (69%), Gaps = 24/513 (5%) Strand=Plus/Minus Query 46671 TTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGC 46730 ||| ||||||||||| | |||||||||| |||||| || || |||||||||||||| | Sbjct 77864 TTCATTAGAAAATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAGCA-C 77806 Query 46731 GAAAGAT-CCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGT-CTCTCTCCG 46788 |||| | |||||||| || || ||||| || || | || || ||| | |||| || | Sbjct 77805 AAAAGCTGCCAGAAAACAAGATACCTTCAACTGCA-CAAAAGC--CAATTACTCTTTCTG 77749 Query 46789 TAACTGGC--ATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAG 46846 || || | || ||||| |||||| || ||||| || ||||| | || || | Sbjct 77748 CAAATGACCGATTATTATTCATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTG 77689 Query 46847 GCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACT---ATCTTTAACATATG 46903 | | | ||| || | ||| || | ||| ||| | |||| | |||| Sbjct 77688 GTAAATGTGATATTGCTTCAAAAAGCA---TTTGGCGATCTTTTACATCTGATATATATT 77632 Query 46904 TATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGT 46963 ||| |||||||| ||| |||| ||||| | || ||||| || |||||||| | Sbjct 77631 GATCAATTAAAAGGGAATAAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCAT 77572 Query 46964 AAAAACATCTTGCTTCAGTAATCTGTACCTC-TGTACAAAATCGTTCAGACAAATTCTCA 47022 || | ||| ||||| || || | ||| | || ||||| | ||| || ||||| Sbjct 77571 AATACATTCTAGCTTCTTCTATTTGAATCTCCTTTAAAAAATT-TACAGCTAAGTTCTCC 77513 Query 47023 TTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCA 47082 | || |||||||||||||| ||||||||||| || |||| ||||||||||| |||||| Sbjct 77512 ATTACAATTCCATCACTAGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTC- 77454 Query 47083 TCGGTAGTCAGTT----TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGC 47138 ||| || || | | ||| || | || || | || ||||| ||||| || Sbjct 77453 -TGGT--TCCTTTAAACTTTCCCAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGC 77397 Query 47139 TGTCCAGAATGACGCCTCTGCTTTTTTATACAT 47171 ||||| ||||| || ||| ||||||| ||||| Sbjct 77396 AGTCCAAAATGAGGCTTCTTCTTTTTTGTACAT 77364 >seq141 Length=3141 Score = 141 bits (156), Expect = 1e-28 Identities = 298/434 (69%), Gaps = 19/434 (4%) Strand=Plus/Minus Query 46284 TTAAAAGTCGACATCTAAA--GAAAAATGATTATCTTCTTGTGA--CATAACTCCCATTT 46339 |||||| || |||||| | ||||| | | | |||| ||| ||||||||| Sbjct 427 TTAAAATTCAGCATCTAGATTGAAAATTTGGTCT-TTCTGATGAGCCATAACTCCTGCCA 369 Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 ||||||||||| |||| |||||||| ||||| |||||||| |||| ||||| ||| | Sbjct 368 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 309 Query 46400 CCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCA 46459 |||| ||||||| ||||| || ||||| || | ||| || ||| || || || Sbjct 308 CCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTA---GTGCAAACA 252 Query 46460 GT---CTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGA 46516 || | ||| ||||| ||||| ||||| ||| | | | ||||||| || |||| Sbjct 251 GTAAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGA 192 Query 46517 GTTTGACCGGTAGAGCCTC-CGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATT 46575 | | || |||| | || | ||| ||| |||||| ||||| || | ||| Sbjct 191 GATCTACAGGTAATGAATCACATAA-AAATGTACGTTCAACTTCAACAGCTTCTGCTATA 133 Query 46576 ATCGATGTTACTGTTTCCTCACTTGGTGGATG--CATCAAATG-TTTAAACATTAAACAT 46632 || | ||| || |||| ||| || | || |||| |||| | | ||||||| Sbjct 132 ATTTCTTGAACTCTT---TCACATGGAAGACGATTATTTAATGTTTTATAAAGTAAACAT 76 Query 46633 GCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCA 46692 |||| || ||||| |||||||||||| |||| ||| ||||||||||| | ||| Sbjct 75 CCAAAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCA 16 Query 46693 GGCATTAGTCCACG 46706 ||||||| |||||| Sbjct 15 GGCATTAATCCACG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712931931464640