Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_031103.1 Length=165772 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 1e-15 >seq2 Length=183582 Score = 98.7 bits (108), Expect = 1e-15 Identities = 197/285 (69%), Gaps = 8/285 (3%) Strand=Plus/Minus Query 140157 TTTACATTGTTCTACGTGATTCATATAGATATGAGTATTACCGCCAGAAAATATCAAATC 140216 |||| |||| || || ||||| ||| ||||||| || ||| | || ||| || || Sbjct 181779 TTTA-ATTGCTCAACATGATTTTCATAAATATGAGCATCACCAATAAAATGTATAAATTC 181721 Query 140217 TCCAGGAATAAGATT-ACACATCTTAGCTACAATATGAACTAACGCAGCATATGATGCAA 140275 |||||| | | || ||| || | ||| | ||| | ||| | ||| ||||||| Sbjct 181720 TCCAGGT-TCATATCCACATATATGAGCAATCATAACACATAATAATGAATAAGATGCAA 181662 Query 140276 TGTTGAATGGCAAGCCCAAGAACACGTCAACACTTCTTTGATACCACT-GCAAATCTAA- 140333 | || ||||| | || || | ||| |||||||||||| | |||| | ||| Sbjct 181661 TATTAAATGGACATCCTAAACCTAAATCACAACTTCTTTGATATAATGAGCAACT-TAAT 181603 Query 140334 --ATAGCCATTACGCACATTAAACTGATAGAACATATGACAAGGTGGTAATGCCATATAT 140391 || |||| |||| ||| ||| | || ||||||||||||||||||||||||||| Sbjct 181602 CTATTATTATTATCAACATAAAATTGAGATAATATATGACAAGGTGGTAATGCCATATAT 181543 Query 140392 TTAAGTTCAGCTGGATTCCACGCAGAAACAATTTGACGCCTATCA 140436 || | | ||| ||||||||| ||||| | || || | |||||| Sbjct 181542 TTCATTGCAGATGGATTCCATGCAGATAAGATATGTCTTCTATCA 181498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530340563689440