Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq211 100 2e-16 seq213 91.5 1e-13 >seq211 Length=153182 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 111094 TTAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAA 111153 |||| ||||| |||||||| || || || || || ||||| || || | ||| ||| Sbjct 121577 TTAATTATGCAGATTTTTGTGAAGACTTTAACGGGTAAAACAATAACACTTGAAGTTGAA 121518 Query 111154 CCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC 111213 || ||| || ||| | ||||| |||||| || |||||||| |||| Sbjct 121517 CCATCTGATACTATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGAAGGGATTCCACCT 121458 Query 111214 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 111273 ||||||||||| | |||| ||| || |||||| | || ||| | ||| | | ||| Sbjct 121457 GATCAACAAAGATTAATTTTTGCTGGGAAACAACTTGAGGATGGTCGGACTTTATCTGAT 121398 Query 111274 TATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||||||| || || ||||| || || |||||||| || ||| | | ||||| Sbjct 121397 TATAATATTCAGAAGGAATCAACTCTTCATTTAGTTTTACGTTTAAGAGGTGG 121345 >seq213 Length=131909 Score = 91.5 bits (100), Expect = 1e-13 Identities = 168/245 (69%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 111082 ATTTATAAGAGTTTAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACC 111141 |||| ||||| || || ||||||||||||||| ||||| || || || ||||| ||||| Sbjct 113817 ATTTGTAAGACTT-AAGAATGCAAATTTTTGTTAAAACCTTAACTGGGAAAACTATTACA 113759 Query 111142 GTGGAAACGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAA 111201 | ||| ||||| ||| | ||| | ||||| ||| || ||||| || Sbjct 113758 TTAGAAGTTGAACCTTCTGATACAATTGAAAATGTAAAGGCAAAGATACAAGACAAGGAG 113699 Query 111202 GGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAA 111261 || | || ||||||||| | | || | ||| || || ||| | |||||| | | Sbjct 113698 GGAATACCTCCAGATCAACAACGTTTAATCTTTGCTGGAAAGCAACTTGAAGATGGCAGA 113639 Query 111262 ACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGC 111321 ||| | | || || ||||| || || || ||||| |||||||||| ||| | | || Sbjct 113638 ACTTTATCAGACTACAATATTCAGAAGGAGTCTACTTTACATTTAGTTTTGAGGTTACGT 113579 Query 111322 GGTGG 111326 ||||| Sbjct 113578 GGTGG 113574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421809775991752