Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq240 174 2e-38 seq141 114 1e-20 >seq240 Length=77866 Score = 174 bits (192), Expect = 2e-38 Identities = 299/422 (71%), Gaps = 19/422 (5%) Strand=Plus/Minus Query 23550 TTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGC 23609 ||||||||||||||||||||| ||||||||||| ||||| |||| ||||||||| ||| | Sbjct 77864 TTCATTAGAAAATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAGCA-C 77806 Query 23610 AAATGAT-CCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTAC--C 23666 ||| | | || ||||| || ||||| ||||| || |||| |||| | || | | | Sbjct 77805 AAAAGCTGCCAGAAAACAAGATACCTTCAACTGCA-CAAAAGCCA-ATTACTCTTTCTGC 77748 Query 23667 AAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACA 23726 ||||| ||||| || ||||| ||| ||| ||| | ||||| | ||||| Sbjct 77747 AAATGACCGATTATTATTC---ATCCACTTTGTTGCCCATTCTGCCTT-AGTTTTAACTG 77692 Query 23727 CTC--AATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATT---ATCTGTTATA 23781 || || ||| | |||||| || || | ||| || || ||||| |||| Sbjct 77691 CTGGTAAATGTGATA-TTGCTTCAAAAAGCA---TTTGGCGATCTTTTACATCTGATATA 77636 Query 23782 TATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAAC 23841 ||| |||||||| | ||| ||||| ||||| | || |||||||| ||||| Sbjct 77635 TATTGATCAATTAAAAGGGAATAAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAAT 77576 Query 23842 CCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTT 23901 |||||| | ||||||||| | ||||| || || ||||| || |||||| || Sbjct 77575 CCATAATACATTCTAGCTTCTTCTATTTGAATCTCCTTTAAAAAATTTACAGCTAAGTTC 77516 Query 23902 TCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTT 23961 || | ||||| ||||||||||| ||||| || || | |||||||| ||||||||| || Sbjct 77515 TCCATTACAATTCCATCACTAGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTT 77456 Query 23962 TC 23963 || Sbjct 77455 TC 77454 >seq141 Length=3141 Score = 114 bits (126), Expect = 1e-20 Identities = 256/377 (68%), Gaps = 18/377 (5%) Strand=Plus/Minus Query 23219 TTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTT 23278 |||| ||||| | || ||| | || ||||| || || ||||| | |||||| ||| | Sbjct 368 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 309 Query 23279 CCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTT---ACATGATAATTC---CT 23332 |||| ||||||||||||| | ||| |||| |||| |||| || | | | Sbjct 308 CCATCCAATCAAATGGATTCGTGACATTGTATAA--CTTTGGAACATC-TAGTGCAAACA 252 Query 23333 TTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTA 23392 |||| | ||| || ||||||||||||||||| ||| || | | || || || | Sbjct 251 GTAAACG---ATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAA 195 Query 23393 TTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAA 23452 | || | ||| || | | |||| |||| ||| ||||| |||||| ||| | Sbjct 194 TGAGATCTACAGGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTA 135 Query 23453 TTATTTGAACAATAACTTCTTCACTAGGTGGAT-ATT--TTAAATACTTAAACAATAAAC 23509 | |||| | |||| ||||| || || ||| |||| ||| | | ||||| Sbjct 134 TAATTT---CTTGAACTCTTTCACATGGAAGACGATTATTTAATGTTTTATAAAGTAAAC 78 Query 23510 ATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATC 23569 || |||| || ||| | |||||||| ||| || | |||||||||||||||||||| Sbjct 77 ATCCAAAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATC 18 Query 23570 CTGGCATTAATCCTCGT 23586 | ||||||||||| ||| Sbjct 17 CAGGCATTAATCCACGT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521486194347800