Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1249 316 2e-81 seq196 246 4e-60 >seq1249 Length=14599 Score = 316 bits (350), Expect = 2e-81 Identities = 1214/1888 (64%), Gaps = 34/1888 (2%) Strand=Plus/Plus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 |||||||| || ||| | ||| || || | || ||||| || ||||||| | Sbjct 11481 GTGAATTGTATAGGATTTGCAGCGCTTTGTGTTCTTAAGTAGTAAGCACCAGTTTTTAAA 11540 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || ||||||| || || |||||| | ||| || | ||| | | || ||| ||| Sbjct 11541 CCCTTCTTCCATCCATAGAAGTGCATAGAAGATAGCTTTGCATAGTTGGCATTTGCAATA 11600 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 | ||||| | ||| ||| |||| ||| | | ||| || ||||| ||||| | || Sbjct 11601 TAAATATTTAGAGACTGAGATTGACAAATGTATGGTCCTCTATCTGCCGCCATATCAATA 11660 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG 53046 | | |||||| ||||||||| | ||||| || | |||| ||||||| || | Sbjct 11661 ACTGCTTTTTGTCTAATTTCCCAGACGGTTTTGTACAGGTCGCG-AATATCTCGCGGTAT 11719 Query 53047 G---TTTGTATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGA-TCTCATCAT 53102 | |||| |||| | |||| | | || || || | || | |||| |||| Sbjct 11720 AGACTCAATATTTTGAACACTTCCATTGTTAGCAATGATACTCTGTTTCAGTCTC-TCAT 11778 Query 53103 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 53162 ||||| | || |||| | | | | ||| ||||| || || || || | Sbjct 11779 CCCATAGTCCCAATTCAAGTAAATCATTCAACAAATGAGGATTCACAACAAAGAACTCCC 11838 Query 53163 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTC 53222 |||||||||| | || | || ||||| |||| | ||||| | |||||||| | Sbjct 11839 CAGACAATACACGCCTATGATATATATTTGAGGTAAATGGTTCAAAGCTTTCATTATTCC 11898 Query 53223 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 53282 | | | |||| || ||||| || ||||| || || ||||| || |||||||| | Sbjct 11899 CTAGTAACTGAGATGTAGATGCGGTAGGCATTGGAGCTACCAACAACGAGTTTCTAAGGC 11958 Query 53283 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC----GACGGTACA 53338 | || | ||||| || || || ||||| |||||||| ||| || ||| Sbjct 11959 CATACTTAGCTATTTTCTCCTTCAGTAAATCCCAGTTCCAAAG-TCCTGAGGAGGGTTGC 12017 Query 53339 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCG 53398 || |||||| | ||| |||| || || ||| | |||| || Sbjct 12018 ACATTCCAGAGATCAAATTGTAGCAGACCTCTACTAGCTGGTGAACCTTGAAATGTTTCA 12077 Query 53399 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 53458 || || || | |||||| ||||| |||||||| || || | ||| | || || || || Sbjct 12078 TAGGGACCATACTTCTCTGCTAGCTCACAACTTGCATCAAGAGCAGCATAGTATATTGTC 12137 Query 53459 TCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 53517 || || |||| |||||| | | || || || ||| ||||||| | || | Sbjct 12138 TCAAATATCTCAACATTTAGTTTCCTG-GCATCTTTAGATTCATATGGATATCTCAATAT 12196 Query 53518 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 53577 ||||| ||||| | ||||| || || | ||| | || ||||||||| |||||| Sbjct 12197 CATAAAACAATCTGCAAGACCTTGTACTCCTAAACCAAGTGGCCTATGTCTCAGATTAGA 12256 Query 53578 GATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGA 53636 | | || ||||||||||||||||| | ||| |||| || ||| || || || Sbjct 12257 CCTC-CTGCACTCTGGAATAGGATAATATCCACGATCAATAACTTCATTTAGATTCCTTG 12315 Query 53637 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCAT-----CTATTAC 53691 ||| || || || || | || || |||||| |||| || |||| | Sbjct 12316 TTGCTACCTTTACTACTTCATATAGCTTTTTAAAATCGAATTTCTTATTATCCCTATCAA 12375 Query 53692 AAACATGTTCAATGCA-ATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 53750 || | | | | |||||||||| |||||||| || ||||| || | | | || Sbjct 12376 CAAAACGAGGGAGCCCTATAGATGCCAAGTTACAAACTGCGACCTCGTTTGAACTAGTAT 12435 Query 53751 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 53810 | | || || || || || ||||| ||| | || || || || | |||||||||||| | Sbjct 12436 ACTCCATAATTTCTGTACATAGATTGCTAGATTTTATCGTACCCAGATTTTGTTGATTGC 12495 Query 53811 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATT 53870 | || ||| ||||||||||| ||| ||||| ||||| || ||||| || || | Sbjct 12496 TTTTACGATTAGCTGCATCCTTATAGCAAATAAATGGAGTACCTGTCTCAATTTGTGACT 12555 Query 53871 CTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT--TTCTCT 53928 || | || ||| | | || || ||| | || || | | |||| | Sbjct 12556 GTAGCAATGCAAACCACAAACTTTGTGCTTTAATTGTT--TTCCTACCGCGACCTTCTTT 12613 Query 53929 TTCGTATAGTGT--ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 53986 ||| ||||||| ||| ||| || ||| | ||| ||||| |||| | || ||||| Sbjct 12614 TTC--ATAGTGTTCATATAATTCTTTAAATTGGTCACCCCAGACATCTTGCATCCCAGGG 12671 Query 53987 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 54046 |||||||| |||||||| || | ||| | | | || | || |||| | ||| || ||| Sbjct 12672 CATTCATCAGGACACATTAATGTCCAGTTTGCATCCTTCTCTACTCTCTCCATGAACAGA 12731 Query 54047 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 54106 ||||| ||||| || ||| ||||| ||| | | ||| ||||| || || ||| Sbjct 12732 TCAGGTATCCATAGTGCTGGAAATATATCACGGCATCTCATCTCCTCTTTACCATGGTTC 12791 Query 54107 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATA 54166 || | | || | || ||| || ||| | |||||| |||||||| || | | | Sbjct 12792 TTCCTTATCTCTATAAATTCCAAAACATCCGCATGCCAAGGTTCCAAATAGACAGCAAGT 12851 Query 54167 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 54226 | || || ||| ||| || || || | || | || || | |||||| || | | Sbjct 12852 GCACCCTTCCTTTTTCCTCCACCTTGGTCAACATAACGTGCTGTATCATTATACACACGC 12911 Query 54227 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 54286 | ||||||||| | |||||| || |||||| || || ||| || ||| || Sbjct 12912 AGCATTGGAATTAAACCATTAGACCTACCATTAGTACCACGGATGTATGATCCTGCAGCT 12971 Query 54287 CGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 54346 || |||||| || | | |||| || || || | || || ||| ||| Sbjct 12972 CGTATATTAGAAACAGCCACCCCTAATCCACCAGCAGTCTTGCTTATATTTGCACATTTC 13031 Query 54347 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 |||| |||||| | ||||| || || ||||| ||| || || | |||||| Sbjct 13032 TTTAGTGTATCAAAAATGCCATCAATTGAGTCATCTGACATTTTGAGAATAAAACAAGAG 13091 Query 54407 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 54466 ||||| || | ||| ||| || ||||| ||||| || |||| ||| || ||||| | Sbjct 13092 GACATCTGTGGGCGAAGAGTACCAGCATTGAATAATGTCGGAGTAGCATGAGTAAAATAC 13151 Query 54467 TTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCC 54525 || | ||| || || | || || || || |||| ||||||| |||| | || || || Sbjct 13152 TTCTGAGAGAGCAGTTCATAAGTTTCAATTGCTGCATCTATATTACCATAG-TGGATACC 13210 Query 54526 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAG 54585 | ||| | |||||| | ||| || || ||||| || ||||| | | | ||| Sbjct 13211 ACAGGAGACTCTCATTAATAGGTGTTGTGGCCTTTCCACAATCTTATCATCGACCCGCAG 13270 Query 54586 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 54645 || || ||| |||| | ||| |||||| ||||||||| ||| ||| || || | | Sbjct 13271 TAAATAAGATCTTTCTAGAGTCTTAAAAGCAAAATAGTCATATTCAAAATCACGG-CTAA 13329 Query 54646 AAT-AATAACTGAGTTGAGTTTATCCTT 54672 ||| |||||||||||| | | |||| || Sbjct 13330 AATCAATAACTGAGTTTAATCTATCTTT 13357 >seq196 Length=8782 Score = 246 bits (272), Expect = 4e-60 Identities = 624/913 (68%), Gaps = 47/913 (5%) Strand=Plus/Minus Query 23789 TTAAAAGTCAACATCTAAA--GAAAAATGATTGTCTT-CT--TGAGACATAACTCCCATT 23843 |||||| ||| |||||| | ||||| | | ||||| || |||| ||||||||| Sbjct 7593 TTAAAATTCAGCATCTAGATTGAAAATT--TGGTCTTTCTGATGAGCCATAACTCCTGCC 7536 Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 ||||||||||| | || ||||| || ||||| ||||||||||||| |||||| ||| Sbjct 7535 ATTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGA 7476 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATC 23963 ||||| |||| ||||||| || ||||| || | || || | | | || | | Sbjct 7475 TCCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGCAAACAGT 7416 Query 23964 AATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 24023 || | ||| || ||||| || |||||| ||| | | | ||||||| || || || Sbjct 7415 AAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAGA 7356 Query 24024 TTAACTGGAA--GAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 24081 | || || | || |||| ||| |||| |||||| || || |||| ||||| Sbjct 7355 TCTACAGGTAATGAATCACA-TAA-AAATGTACGTTCAACTTCAACAGCTTCTGCTATAA 7298 Query 24082 TAGATCTT--ACTGTTTCTTCACTCGGTG--GATACAATAAATGTTTAA-ACATCAAACA 24136 | |||| ||| |||| || | | | ||| | | ||||||| | | | ||||| Sbjct 7297 TT--TCTTGAACTCTTTCA-CA-TGGAAGACGATT-ATTTAATGTTTTATAAAGTAAACA 7243 Query 24137 TGCGAAATC-GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTC 24195 | | || || ||| || | ||| || |||||| |||| ||| || ||||| || | || Sbjct 7242 TCCAAAGTCCGCA-TGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATC 7184 Query 24196 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAA 24254 | ||||||| ||||| || |||||||||||||| | | |||| | | |||||||| || Sbjct 7183 CAGGCATTAATCCACGTTTCTTAAGCCAAAATATAG-CACAAAAGCTGCCAGAAAACAAG 7125 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCC--ATAACCGGCGCTGTCATGTA 24312 || ||||| ||||| |||| |||| | ||||||| | || |||| | | || | Sbjct 7124 ATACCTTCAACTGCACAAAAGCCAATTACTCTTTCTGCAAATGACCG--ATTATTATTCA 7067 Query 24313 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC-ACAAGGCATTGTCTCTATAGCATTA 24371 |||||||| ||||| || ||||| |||| || | | | ||| ||| || | | Sbjct 7066 TCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGT-GATATTGCTTCA 7008 Query 24372 AAGAG---ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATAC 24428 || || | | | || |||| |||| | |||| |||||| ||||| ||| Sbjct 7007 AAAAGCATTTGGCGATCTT--TTAC-ATCTGATATATATTGATCAATTAAAAGGGAATAA 6951 Query 24429 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA-TCTAGCCTCGGT 24487 |||| ||||| | || || || ||||||||||| || | ||| |||||| || Sbjct 6950 GTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATA-ATACATTCTAGCTTCTTC 6892 Query 24488 AATCTGTA-CTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 24546 || || | || || || ||||| | | ||||| || || | || ||||| ||||| | Sbjct 6891 TATTTGAATCTCCTTTAAAAAAT-TTACAGCTAAGTTCTCCATTACAATTCCATCACTAG 6833 Query 24547 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT---GTTAGTTTAT 24603 |||||||||| || || |||| ||| ||||||| |||| |||||| ||| | | Sbjct 6832 CTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTT---TCTGGTTCCTTTAAACTTT 6776 Query 24604 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 24663 |||||| | || || | | || ||| | ||||| | ||||||||||| || ||| Sbjct 6775 CCCAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTT 6716 Query 24664 CCTTTTTATACAT 24676 | ||||| ||||| Sbjct 6715 CTTTTTTGTACAT 6703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593710927854240