Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq431 95.1 1e-14 seq581 91.5 1e-13 >seq431 Length=1763 Score = 95.1 bits (104), Expect = 1e-14 Identities = 171/249 (69%), Gaps = 1/249 (0%) Strand=Plus/Minus Query 28940 ATTTATAAGTAATAGTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCAT 28999 |||||| |||| | | ||| ||||||||| || | ||||| || || || ||||| || Sbjct 358 ATTTATTTGTAAGACT-TAAGAATGCAAATTTTTGTTAAAACCTTAACTGGGAAAACTAT 300 Query 29000 TACCGCCGAAACGGAACCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAA 29059 ||| ||| ||||| | || || | | || | ||| ||| || || || Sbjct 299 TACATTAGAAGTTGAACCTTCTGATACAATTGAAAATGTAAAGGCAAAGATACAAGACAA 240 Query 29060 AGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTC 29119 || || | || |||||||||| | | |||||||| || || ||||| |||||| Sbjct 239 GGAGGGAATACCTCCAGATCAACAACGTTTAATCTTTGCTGGAAAGCAACTTGAAGATGG 180 Query 29120 CAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATT 29179 || |||| | | || ||||||||||||||||| |||||| | || | || || | || Sbjct 179 CAGAACTTTATCAGACTACAATATTCAGAAGGAGTCTACTTTACATTTAGTTTTGAGGTT 120 Query 29180 ACGAGGAGG 29188 ||| || || Sbjct 119 ACGTGGTGG 111 >seq581 Length=7318 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | || || || ||||| ||||| || || ||| ||||| | Sbjct 1400 ATGCAGATTTTTGTGAAGACTTTAACGGGTAAAACAATAACACTTGAAGTTGAACCATCT 1341 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| |||||| ||||||||||| | || |||||| Sbjct 1340 GATACTATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGAAGGGATTCCACCTGATCAA 1281 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | || ||||| || |||||||| || ||| ||| | | ||||| ||| Sbjct 1280 CAAAGATTAATTTTTGCTGGGAAACAACTTGAGGATGGTCGGACTTTATCTGATTATAAT 1221 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||||||||| || ||||| | || ||||| ||| |||| || Sbjct 1220 ATTCAGAAGGAATCAAC-CTTCATTTAGTTTTACGTTTAAGAGGTGG 1175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428328493143890