Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq431 86.0 5e-12 seq581 82.4 6e-11 >seq431 Length=1763 Score = 86.0 bits (94), Expect = 5e-12 Identities = 169/249 (68%), Gaps = 1/249 (0%) Strand=Plus/Minus Query 25013 ATTTATAAGTAATAGTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCAT 25072 |||||| |||| | | ||| ||||||||| || | ||||| || || || ||||| || Sbjct 358 ATTTATTTGTAAGACT-TAAGAATGCAAATTTTTGTTAAAACCTTAACTGGGAAAACTAT 300 Query 25073 TACCGCCGAAACGGAACCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAA 25132 ||| ||| ||||| | || || | | || | ||| ||| || || || Sbjct 299 TACATTAGAAGTTGAACCTTCTGATACAATTGAAAATGTAAAGGCAAAGATACAAGACAA 240 Query 25133 AGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTC 25192 || || | || |||||||||| | | |||||||| || || ||| | |||||| Sbjct 239 GGAGGGAATACCTCCAGATCAACAACGTTTAATCTTTGCTGGAAAGCAACTTGAAGATGG 180 Query 25193 CAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATT 25252 || |||| | | || ||||||||||| ||||| |||||| | || | || || | || Sbjct 179 CAGAACTTTATCAGACTACAATATTCAGAAGGAGTCTACTTTACATTTAGTTTTGAGGTT 120 Query 25253 ACGAGGAGG 25261 ||| || || Sbjct 119 ACGTGGTGG 111 >seq581 Length=7318 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/227 (68%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || | || || || ||||| ||||| || || ||| ||||| | Sbjct 1400 ATGCAGATTTTTGTGAAGACTTTAACGGGTAAAACAATAACACTTGAAGTTGAACCATCT 1341 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| |||||| ||||||||||| | || |||||| Sbjct 1340 GATACTATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGAAGGGATTCCACCTGATCAA 1281 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | || ||||| || |||||| | || ||| ||| | | ||||| ||| Sbjct 1280 CAAAGATTAATTTTTGCTGGGAAACAACTTGAGGATGGTCGGACTTTATCTGATTATAAT 1221 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| |||||||| || ||||| | || ||||| ||| |||| || Sbjct 1220 ATTCAGAAGGAATCAAC-CTTCATTTAGTTTTACGTTTAAGAGGTGG 1175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410789600529332