Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1 215 8e-51 seq581 196 7e-45 >seq1 Length=29879 Score = 215 bits (238), Expect = 8e-51 Identities = 494/726 (68%), Gaps = 16/726 (2%) Strand=Plus/Minus Query 205308 ATCTACTTGTCtttttatttttaattttGGAAATGGGTTTGGTGTACGTTCTAATTGttt 205367 |||||||| | ||| | | |||||| ||||||||| | ||| ||||| || ||| | Sbjct 29312 ATCTACTTTACGTTTCAATCTTAATTGTGGAAATGGTCTAGGTAAACGTTTTATTTGCTG 29253 Query 205368 ttttAATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTC 205427 ||||||| | || |||||| |||| ||||| |||| ||||||| ||| |||||||| Sbjct 29252 TTTTAATTGCTCAACATGATTTTCATAAATATGAGCATCACCAATAAAATGTATAAATTC 29193 Query 205428 ATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAAC 205487 |||| | | || ||| ||||||||| | ||||| |||| |||| Sbjct 29192 TCCAGGTTCATATCCACATATATGAGCAATCATAACACATAATAATGAATAAGATGCAAT 29133 Query 205488 ATTAAATGGTACA-CCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGAT 205546 ||||||||| ||| |||||||| | |||| ||||||||| | | || | | || Sbjct 29132 ATTAAATGG-ACATCCTAAACCTAAATCACAACTTCTTTGATATAATGAGCAACTTA-AT 29075 Query 205547 AT-TTATTATTAATTACATGAAATTGTACAAAACA-ATGACAAGGTGGTATAACCATAT- 205603 | ||||||||| |||| |||||| | | || | |||||||||||||| |||||| Sbjct 29074 CTATTATTATTATCAACATAAAATTG-AGATAATATATGACAAGGTGGTAATGCCATATA 29016 Query 205604 TTTCAACATCTATAGGATTCCAGGCTGTTAATATTATAT-TTCTAGATTCAGGtttattt 205662 ||||| || |||||||| || | ||| || || | ||||| | ||| || ||| Sbjct 29015 TTTCATTGCAGAT-GGATTCCATGCAGATAAGAT-ATGTCTTCTATCATAAGGATT-TTT 28959 Query 205663 tttattttattta-tAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATC 205721 ||| | ||| | | | || || ||||||||| | |||||| ||||||| || Sbjct 28958 CTTAAGTGATTCAATTAAATTTGATAATTGATCTACTCCTTGCCCATTATAATTATCATG 28899 Query 205722 CATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATC 205781 ||| |||||| ||| |||||| | ||||||||||||||| | |||||| || || Sbjct 28898 CATTGTCTTATATTCTGCATTAAAATGTCTCCATTGAAAACCATATATTGGACCCAAGTC 28839 Query 205782 ACCTTCTTTTCTATCATTAAAACCACGtttttttatatattttaatgatccattttcatc 205841 | |||| || || | | |||| ||| || | ||| | | ||||||||| || | Sbjct 28838 ATTCTCTTCTCGATAACCTAGACCAATTTTATTCAAATACTCTTTTGATCCATTACCAGC 28779 Query 205842 ccaaatatggattcctttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCA 205901 ||||||| | | ||||| | || ||| ||| || || ||||||||| Sbjct 28778 CCAAATAAATACTTTTTTATCTAATAAGTGATTACCATTTGTATCACCTTTTATAAACCA 28719 Query 205902 TAATAATTCTTCAACAATTCCTCTC--CAAAACATTGATTTTGTTGTAAATAATGGAAAT 205959 | |||||| |||| |||| |||| ||||| ||| || || ||||| |||||| Sbjct 28718 CATTAATTCCTCAAAAATTATTCTCATTGCCACATT--TTTAGTAGTTAATAAGGGAAAT 28661 Query 205960 GAATCATCTAATTTATATTTCATAGTTAAACCATATACAGTTTTTGTATCTACACCTGTT 206019 || ||| ||| | || ||| | | ||| ||| | | ||||| | ||| ||| Sbjct 28660 GATTCACGTAAATCGAATCGCATTGATGCTCCAAATATTGAATATGTATTAATACCAGTT 28601 Query 206020 CTATTT 206025 |||||| Sbjct 28600 CTATTT 28595 >seq581 Length=7318 Score = 196 bits (216), Expect = 7e-45 Identities = 181/228 (79%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| |||| || ||||| ||||| | || ||||| || | Sbjct 1400 ATGCAGATTTTTGTGAAGACTTTAACGGGTAAAACAATAACACTTGAAGTTGAACCATCT 1341 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| |||| |||||||||||||||||||| || |||||||||||| Sbjct 1340 GATACTATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGAAGGGATTCCACCTGATCAA 1281 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| || |||||| | |||||| |||| || ||| ||||||||| Sbjct 1280 CAAAGATTAATTTTTGCTGGGAAACAACTTGAGGATGGTCGGACTTTATCTGATTATAAT 1221 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||||| || |||||||| || ||||| |||||||||||| |||||||| Sbjct 1220 ATTCAGAAGGAATCAACCTT-CATTTAGTTTTACGTTTAAGAGGTGGT 1174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755442420678400