Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq581 116 6e-21 seq431 114 2e-20 >seq581 Length=7318 Score = 116 bits (128), Expect = 6e-21 Identities = 158/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | ||| || ||||| || || ||||| || ||||||||||| || Sbjct 1175 CCACCTCTTAAACGTAAAACTAAATG-AAGGTTGATTCCTTCTGAATATTATAATCAGAT 1233 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || | |||||| ||||||||||| |||||||| ||||| || ||| Sbjct 1234 AAAGTCCGACCATCCTCAAGTTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGTGGA 1293 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| |||||| || ||| ||| Sbjct 1294 ATCCCTTCTTTATCTTGAATTTTAGCCTTTACATTTTCAATAGTATCAGATGGTTCAACT 1353 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || ||||| ||||||||||| ||||| || || | || || ||||| Sbjct 1354 TCAAGTGTTATTGTTTTACCCGTTAAAGTCTTCACAAAAATCTGCAT 1400 >seq431 Length=1763 Score = 114 bits (126), Expect = 2e-20 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 146063 CTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTA 146122 || || || |||||||||||||| || || ||||| || ||||| | |||||||| | Sbjct 123 CTCAAAACTAAATGTAAAGTAGACTCCTTCTGAATATTGTAGTCTGATAAAGTTCTGCCA 182 Query 146123 TCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTA 146182 || || | ||| ||||||||||| || || | ||| ||||| ||||| ||||| || || Sbjct 183 TCTTCAAGTTGCTTTCCAGCAAAGATTAAACGTTGTTGATCTGGAGGTATTCCCTCCTTG 242 Query 146183 TCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATT 146242 ||||| ||||| ||| ||| ||||||| ||| || Sbjct 243 TCTTGTATCTTTGCCTTTACATTTTCAATTGTATCAGAAGGTTCAACTTCTAATGTAATA 302 Query 146243 GTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||||| || ||||| ||||||| || ||||||||| Sbjct 303 GTTTTCCCAGTTAAGGTTTTAACAAAAATTTGCATT 338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743513035112960