Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq196 210 2e-49 >seq196 Length=8782 Score = 210 bits (232), Expect = 2e-49 Identities = 614/927 (66%), Gaps = 39/927 (4%) Strand=Plus/Minus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACT---GACAT 15942 |||||| ||| ||||||| || | | ||||| | || | ||||||| | ||| Sbjct 7593 TTAAAATTCAGCATCTAGATTGAAAATTTGGTCTTTCTGATGAGCCATAACTCCTGCCAT 7534 Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 || | |||||| |||| || ||||| || || ||||| |||| |||||||||| Sbjct 7533 TT---GGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAG 7477 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATT--TATCG--CATCCCAATTCCA 16058 ||||| ||||||| ||||| | ||| | |||| | | | |||| | | | | Sbjct 7476 ATCCATCCAATCAAATGGATTCGTG--ACATT-GTATAACTTTGGAACATCT-AGTGCAA 7421 Query 16059 ACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTA 16118 ||| ||| | ||| || |||||||| ||||| || |||||| | | ||||| || | Sbjct 7420 ACAGTAAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAA 7361 Query 16119 TTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGA 16178 | | | ||||| | || || |||||| | ||| | | ||| ||||| | Sbjct 7360 TGAGATCTACAGGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTA 7301 Query 16179 TTATATCTCTTACTACACTATTTAAC--GGAGG--GTTTAATAAGTGTTTAA-ACATTAT 16233 | || ||| | ||| ||| || ||| | | ||| | | ||||| | | | || Sbjct 7300 TAATTTCT-----TGAACTCTTTCACATGGAAGACGATTATTTAATGTTTTATAAAGTAA 7246 Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 ||| |||| || ||| | ||||| || ||| ||||| || || |||||||| | Sbjct 7245 ACATCCAAAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAA 7186 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAA 16353 || ||||||| ||| ||||| |||| |||||||||||| ||| |||||||| || Sbjct 7185 TCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAGCACAAAAGCTGCCAGAAAACAA 7126 Query 16354 TATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttc 16413 |||||||||||||| ||| ||| | || || | | | | ||| ||| ||| Sbjct 7125 GATACCTTCAACTGCACAAAAGCCAATTACTCTTTCTGCAAATGACCGATTATTA--TTC 7068 Query 16414 tatccattttttagcccaatttgctttttgtttAAC--ACAGTTCATGTTCTCTATTGCA 16471 ||||| ||| | ||||| | ||| || |||||| || |||| |||||| Sbjct 7067 -ATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGT--GATATTGCT 7011 Query 16472 TTAAATAAATAAttt--ttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTAT 16529 | || ||| |||| ||||| |||| | ||||| ||| |||| | || Sbjct 7010 TCAA--AAAGCATTTGGCGATCTTTTACATCTGATATATATTGATCAATTAAAAGGGAAT 6953 Query 16530 ACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGG 16589 | |||| ||||| | |||||| || || ||||| |||||| | ||||||||| Sbjct 6952 AAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATAATACATTCTAGCTTCTT 6893 Query 16590 ATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAG 16649 |||||| | || |||| || | |||||||| || | || |||||||| |||| Sbjct 6892 CTATTTGAATCTCCTTTAAAAAATTTACAGCTAAGTTCTCCATTACAATTCCATCACTAG 6833 Query 16650 CTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttC--GTTATCTGAAAGTTTTAA 16707 |||||||||| || | | | ||||||||||| |||||| ||| | ||| ||| Sbjct 6832 CTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTCTGGTTCCTTTAAACTTT--C 6775 Query 16708 CCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGC 16767 ||| || | || | |||||| | ||||||| |||||||||| || || | | Sbjct 6774 CCAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTC 6715 Query 16768 CTTTTTATACATTTTCCATATGTCTTC 16794 ||||| |||||| ||| || |||| Sbjct 6714 TTTTTTGTACATTGACCACATTACTTC 6688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462503686346800