Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq196 257 2e-63 >seq196 Length=8782 Score = 257 bits (284), Expect = 2e-63 Identities = 587/866 (68%), Gaps = 37/866 (4%) Strand=Plus/Minus Query 13914 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13973 |||| |||||| |||| ||| ||||| |||||||||||||||| | ||| ||| | Sbjct 7534 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 7475 Query 13974 CCATAAAATCAAATGGATTTGTTGACATA--AACACTTTATCACAACCTAGTTCTAATAG 14031 |||| ||||||||||||| || ||||| | ||||| ||| | |||| | || || Sbjct 7474 CCATCCAATCAAATGGATTCGT-GACATTGTATAACTTTGGAACATC-TAGTGCAAACAG 7417 Query 14032 TAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 14091 ||| | ||| |||| || ||||||||||| | |||||| | ||||||| || || || Sbjct 7416 TAAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAG 7357 Query 14092 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151 | |||||| | | || ||||||| ||| | ||||| || |||||| Sbjct 7356 ATCTACAGGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTATAAT 7297 Query 14152 AATCGT-AATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAA-AAATTAAACACGCA 14209 || | || ||||| | | || ||| |||| |||||| | ||| |||||| || Sbjct 7296 T-TCTTGAACTCTTTCACATGGAAGACGATTATTTA-ATGTTTTATAAAGTAAACATCCA 7239 Query 14210 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 14269 || || ||||| || ||||||||| || ||||| || |||||||||||||| ||| Sbjct 7238 AAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCAGGC 7179 Query 14270 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATATTCC 14328 || ||||| ||||| || | ||||||||| ||| | || | | || ||||| || || || Sbjct 7178 ATTAATCCACGTTTCTTAAGCCAAAATATAGCA-CAAAAGCTGCCAGAAAACAAGATACC 7120 Query 14329 CTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCA 14388 ||||||||| ||| | |||| || |||| |||| || || || ||| ||||| Sbjct 7119 TTCAACTGCACAAAAGCCAATTACTCTTTCTGCAAATGACCGATTATTATTC---ATCCA 7063 Query 14389 TTTTCTAGCCCATTCAGAtttttttttAA-------TAAA----ATCCATTGTTTC-AAT 14436 ||| | |||||||| | || |||||| |||| || |||| ||| || Sbjct 7062 CTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGTGAT--ATTGCTTCAAAA 7005 Query 14437 AGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCT 14496 |||||| || | ||| |||| | ||| || ||| |||||| | | | Sbjct 7004 AGCATT-------TG-GCGATCT-TTTA-CATCTGATATATATTGATCAATTAAAAGGGA 6955 Query 14497 ATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14556 ||| ||||| ||| || | |||||||| || ||||| |||||| | ||||||||| Sbjct 6954 ATAAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATAATACATTCTAGCTTC 6895 Query 14557 TGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14616 | ||| | ||| |||| || | || || || || | || || |||||||| Sbjct 6894 TTCTATTTGAATCTCCTTTAAAAAATTTACAGCTAAGTTCTCCATTACAATTCCATCACT 6835 Query 14617 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTT 14676 ||||||||||||||| || | | ||||||||| | || ||| | | | ||| Sbjct 6834 AGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTCTGGTTCCTTTAAACTTTC 6775 Query 14677 CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGC 14736 |||||| | |||| | | ||||| || || | |||||||| || | | Sbjct 6774 CCAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTC 6715 Query 14737 TTTTTTATACATTACCCATATTTCTT 14762 |||||| |||||| ||| ||| ||| Sbjct 6714 TTTTTTGTACATTGACCACATTACTT 6689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482336929837840