Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq581 89.7 4e-13 seq431 82.4 6e-11 >seq581 Length=7318 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/221 (69%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 24829 ATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCG 24888 || |||||||| ||||| || || ||||| || ||||| ||||| | || || ||| | Sbjct 1403 ATTATGCAGATTTTTGTGAAGACTTTAACGGGTAAAACAATAACACTTGAAGTTGAACCA 1344 Query 24889 AGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 || | | | |||| ||| |||| |||||| | |||||||| | || ||| Sbjct 1343 TCTGATACTATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGAAGGGATTCCACCTGAT 1284 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 || ||| | ||||| | ||| || |||||||| || ||| |||| | ||||| Sbjct 1283 CAACAAAGATTAATTTTTGCTGGGAAACAACTTGAGGATGGTCGGACTTTATCTGATTAT 1224 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATT 25049 | || ||||| || | || ||||||||||| ||||| || Sbjct 1223 AATATTCAGAAGGAATCAAC-CTTCATTTAGTTTTACGTTT 1184 >seq431 Length=1763 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || ||||||||||||||||| || ||||| || || | || || ||| | Sbjct 337 ATGCAAATTTTTGTTAAAACCTTAACTGGGAAAACTATTACATTAGAAGTTGAACCTTCT 278 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | |||| ||| |||| ||| || | || || || |||| || || Sbjct 277 GATACAATTGAAAATGTAAAGGCAAAGATACAAGACAAGGAGGGAATACCTCCAGATCAA 218 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||||||||||| | ||| || || ||||| |||||| || ||| | || |||| Sbjct 217 CAACGTTTAATCTTTGCTGGAAAGCAACTTGAAGATGGCAGAACTTTATCAGACTACAAT 158 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || ||||| ||| | || | |||||||| || | || || || ||| Sbjct 157 ATTCAGAAGGAGTCTACTTTACATTTAGTTTTGAGGTTACGTGGTGGT 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418296668960960