Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1249 118 9e-22 seq196 82.4 7e-11 >seq1249 Length=14599 Score = 118 bits (130), Expect = 9e-22 Identities = 361/543 (66%), Gaps = 15/543 (3%) Strand=Plus/Plus Query 23031 CAAGATTGCATACGGCCACCTCGTCTTTGGAC--GTGTACTCTACAATTTCGGTACATAG 23088 |||| || || || || ||||||| ||| || || ||||| | |||||| |||||||| Sbjct 12401 CAAG-TTACAAACTGCGACCTCGT--TTGAACTAGTATACTCCATAATTTCTGTACATAG 12457 Query 23089 ATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTT 23148 ||||||| | |||||||| |||| ||| || |||||||| ||||| | |||||| Sbjct 12458 ATTGCTAGATTTTATCGTACCCAGATTTTGTTGATTGCTTTTACGATTAGCTGCATCCTT 12517 Query 23149 GTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGT 23208 ||| || | || || || ||||| | || |||| | | || ||||| | | Sbjct 12518 ATAGCAAATAAATGGAGTACCTGTCTCAATTTGTGACTGTAGCAATGCAAACCACAAACT 12577 Query 23209 CTGAGCGTGAACACGTCGCACGTAC--CTGCCTTCTTCCTCGTACTTTTGGTACAACGCG 23266 || || | || || | ||| | ||||||| || || | || || || | Sbjct 12578 TTGTGCTTTAA-TTGT-TTTCCTACCGCGACCTTCTTTTTCATAGTGTTCATATAATTCT 12635 Query 23267 TCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATC-GGACACATGAGAC 23324 | ||||| | |||| | ||| || || || || ||| |||| |||||||| | Sbjct 12636 TTAAATTGGTCACCCCAGACA-TCTTGCATCCCAGGGCATT-CATCAGGACACATTAATG 12693 Query 23325 TCCACATTGAGTCATTTTCAACGCGTCT-CATAAAAAGATCCGGTATCCATAGAGCGTAG 23383 |||| ||| || || || || | ||| ||| || ||||| ||||||||||| || Sbjct 12694 TCCAGTTTGCATCCTTCTCTACTC-TCTCCATGAACAGATCAGGTATCCATAGTGCTGGA 12752 Query 23384 AACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCC 23443 || | || ||| | || ||||||||| || |||||| | | || | ||| ||| Sbjct 12753 AATATATCACGGCATCTCATCTCCTCTTTACCATGGTTCTTCCTTATCTCTATAAATTCC 12812 Query 23444 AACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCG 23503 || || ||||||||||| || || | || || |||| || ||| || || || Sbjct 12813 AAAACATCCGCATGCCAAGGTTCCAAATAGACAGCAAGTGCACCCTTCCTTTTTCCTCCA 12872 Query 23504 CCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG 23563 || || || || ||||| || || | || ||||| | ||||| || | | ||| || Sbjct 12873 CCTTGGTCAACATAACGTGCTGTATCATTATACACACGCAGCATTGGAATTAAACCATTA 12932 Query 23564 GAC 23566 ||| Sbjct 12933 GAC 12935 >seq196 Length=8782 Score = 82.4 bits (90), Expect = 7e-11 Identities = 347/545 (64%), Gaps = 11/545 (2%) Strand=Plus/Plus Query 57579 ATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGAT 57638 ||||||||||| | |||||| || |||||||| | ||||| |||| | | |||| Sbjct 6703 ATGTACAAAAAAGAAGAAGCCTCATTTTGGACTGCAGAAGAGATAGATTTAGGTCAGGAC 6762 Query 57639 CTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCG 57698 |||| |||||||| | || ||| | || | | ||||||||||| | || || || Sbjct 6763 ATGAGAGATTGGGAAAGTTTAAAGGAACCAGAAAAACATTTTATTAAATATGTCTTAGCA 6822 Query 57699 TTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAA 57758 ||||| || || ||||| ||||| | ||||| || | | || |||| | | || Sbjct 6823 TTTTTTGCAGCTAGTGATGGAATTGTAATGGAGAACTTAGCTGTAAATTTTTTAAAGGAG 6882 Query 57759 GTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCAT 57818 | ||| | || || ||| | ||| ||||||||| | || || || | | || Sbjct 6883 ATTCAAATAGAAGAAGCTAGAATGTATTATGGATTTCAAATTGCTATGGAGCAGATTCAC 6942 Query 57819 TCAGAAATGTATTCGCT----ACTCATCGATACGTACGTGAAGGACAACGACGAGAAACG 57874 |||| ||||| || | | ||| ||| || || | | || || ||| | Sbjct 6943 AGTGAAACTTATTCCCTTTTAATTGATCAATATATATCAGATGTAAAAGATCGCCAAATG 7002 Query 57875 TAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAAT 57934 || || | || || | | || || | | |||||||| ||| ||| Sbjct 7003 ----CTTTTTGAAGCAATATCACATTTACCAGCAGTTAAAACTAAGGCAGAATGGGCAAC 7058 Query 57935 CAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGT 57994 || ||||| || | ||| || || || || || |||| | || || || Sbjct 7059 AAAGTGGATGAATA-ATAATCGGTCA--TTTGCAGAAAGAGTAATTGGCTTTTGTGCAGT 7115 Query 57995 CGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCT 58054 |||||||| || ||||| ||||||||| || ||||||||| | |||||||| || | Sbjct 7116 TGAAGGTATCTTGTTTTCTGGCAGCTTTTGTGCTATATTTTGGCTTAAGAAACGTGGATT 7175 Query 58055 GATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGA 58114 ||||| || | || ||| || || | ||||| | || || ||| | ||| | || Sbjct 7176 AATGCCTGGATTAACATTTTCTAATGAACTAATATCTAGAGATGAAGGTATTCATGCGGA 7235 Query 58115 TTTTG 58119 |||| Sbjct 7236 CTTTG 7240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445758387348960