Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1249 311 1e-79 seq196 250 3e-61 >seq1249 Length=14599 Score = 311 bits (344), Expect = 1e-79 Identities = 1210/1879 (64%), Gaps = 40/1879 (2%) Strand=Plus/Plus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 |||||||| || ||| | ||| || || | || ||||| || ||||||| | Sbjct 11481 GTGAATTGTATAGGATTTGCAGCGCTTTGTGTTCTTAAGTAGTAAGCACCAGTTTTTAAA 11540 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || ||||||| || || |||||| | ||| || | ||| | | || ||| ||| Sbjct 11541 CCCTTCTTCCATCCATAGAAGTGCATAGAAGATAGCTTTGCATAGTTGGCATTTGCAATA 11600 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 | ||||| | ||| ||| |||| ||| | | ||| || ||||| ||||| | || Sbjct 11601 TAAATATTTAGAGACTGAGATTGACAAATGTATGGTCCTCTATCTGCCGCCATATCAATA 11660 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG 62284 | | |||||| ||||||||| | ||||| || | |||| ||||||| || | Sbjct 11661 ACTGCTTTTTGTCTAATTTCCCAGACGGTTTTGTACAGGTCGCG-AATATCTCGCGGTAT 11719 Query 62285 G---TTTGTATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGA-TCTCATCAT 62340 | |||| |||| |||| | | || || || | || | |||| |||| Sbjct 11720 AGACTCAATATTTTGAACACTTCCATTGTTAGCAATGATACTCTGTTTCAGTCTC-TCAT 11778 Query 62341 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTC 62400 ||||| | || |||| | | | | ||| || || || || ||| || | Sbjct 11779 CCCATAGTCCCAATTCAAGTAAATCATTCAACAAATGAGGATTCACAACAAAGAACTCCC 11838 Query 62401 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTC 62460 |||||||||| | || | || ||||| |||| | ||||| | |||||||| | Sbjct 11839 CAGACAATACACGCCTATGATATATATTTGAGGTAAATGGTTCAAAGCTTTCATTATTCC 11898 Query 62461 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62520 | | | |||| || ||||| || ||||| || || ||||| || |||||||| | Sbjct 11899 CTAGTAACTGAGATGTAGATGCGGTAGGCATTGGAGCTACCAACAACGAGTTTCTAAGGC 11958 Query 62521 CGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCC----GACGGTACA 62576 | || | ||||| || || || ||||| |||||||| ||| || ||| Sbjct 11959 CATACTTAGCTATTTTCTCCTTCAGTAAATCCCAGTTCCAAAG-TCCTGAGGAGGGTTGC 12017 Query 62577 ACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCA 62636 ||| | ||||||| | ||| |||| || || ||| | |||| ||| Sbjct 12018 ACATTCCAGAGATCAAATTGTAGCAGACCTCTACTAGCTGGTGAACCTTGAAATGTTTCA 12077 Query 62637 TATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62696 || || || | |||||| ||||| | |||||| || || | ||| | || || || || Sbjct 12078 TAGGGACCATACTTCTCTGCTAGCTCACAACTTGCATCAAGAGCAGCATAGTATATTGTC 12137 Query 62697 TCAAAGATCTTCTTATTTAG-ATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAG 62755 ||||| |||| |||||| || || || || ||| ||||||| | || | Sbjct 12138 TCAAATATCTCAACATTTAGTTTCCTG-GCATCTTTAGATTCATATGGATATCTCAATAT 12196 Query 62756 AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62815 ||||| || || | ||||| || || | ||| | || ||||||||| |||||| Sbjct 12197 CATAAAACAATCTGCAAGACCTTGTACTCCTAAACCAAGTGGCCTATGTCTCAGATTAGA 12256 Query 62816 GATTTCAGC-TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 62874 | | || ||||||||||||||||| | ||| |||| || ||| ||||| || Sbjct 12257 -CCTCCTGCACTCTGGAATAGGATAATATCCACGATCAATAACTTCATTTAGATTCCTTG 12315 Query 62875 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT-----CTAT-TA 62928 ||| || || || || | || || |||||| ||| | || |||| | Sbjct 12316 TTGCTACCTTTACTACTTCATATAGCTTTTTAAAATCGAATTTCTTATTATCCCTATCAA 12375 Query 62929 CAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCAT 62988 |||| | | | |||||||| ||||| || || ||||| || | | | || Sbjct 12376 CAAAACGAGGGAGCCCTATAGATGCCAAGTTACAAACTGCGACCTCGTTTGAACTAGTAT 12435 Query 62989 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTAC 63048 | | || || || || || ||||| ||| | || || || || | |||||||||||| | Sbjct 12436 ACTCCATAATTTCTGTACATAGATTGCTAGATTTTATCGTACCCAGATTTTGTTGATTGC 12495 Query 63049 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 63108 | || ||| ||||||||||| ||| ||||||||||| || ||||| || || | Sbjct 12496 TTTTACGATTAGCTGCATCCTTATAGCAAATAAATGGAGTACCTGTCTCAATTTGTGACT 12555 Query 63109 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTC--CTTTCTCT 63166 || | || ||| | | | || || ||| | || || | | | |||| | Sbjct 12556 GTAGCAATGCAAACCACAAACTTTGTGCTTTAATTGT--TTTCCTACCGCGACCTTCTTT 12613 Query 63167 TTCGTATAGAGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGA 63224 ||| |||| || ||| ||| || || | ||| ||||| |||| | || | ||| Sbjct 12614 TTC--ATAGTGTTCATATAATTCTTTAAATTGGTCACCCCAGACATCTTGCATCCCAGGG 12671 Query 63225 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63284 |||||||| |||||||| || | ||| | | | || | || |||| | ||| || ||| Sbjct 12672 CATTCATCAGGACACATTAATGTCCAGTTTGCATCCTTCTCTACTCTCTCCATGAACAGA 12731 Query 63285 TCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTC 63344 ||||| ||||| || ||| ||||| ||| | ||| ||||| || || ||| Sbjct 12732 TCAGGTATCCATAGTGCTGGAAATATATCACGGCATCTCATCTCCTCTTTACCATGGTTC 12791 Query 63345 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63404 || | | || | || ||| || ||| | |||||| |||||||| || | || | Sbjct 12792 TTCCTTATCTCTATAAATTCCAAAACATCCGCATGCCAAGGTTCCAAATAGACAGCAAGT 12851 Query 63405 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63464 | || || ||| ||| || || || | || | || || | |||||| || | | Sbjct 12852 GCACCCTTCCTTTTTCCTCCACCTTGGTCAACATAACGTGCTGTATCATTATACACACGC 12911 Query 63465 AACATTGGAATAATACCGTTTGATATACCATTGGTAC--CGGAGATAT-AGCCTCCACTG 63521 | ||||||||| | ||| || || ||||||| |||| |||| ||| | ||| || Sbjct 12912 AGCATTGGAATTAAACCATTAGACCTACCATTAGTACCACGGATGTATGATCCTGCA--- 12968 Query 63522 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63581 || || |||||| || | | |||| ||| || || | || || ||| ||| Sbjct 12969 GCTCGTATATTAGAAACAGCCACCCCTAATCCACCAGCAGTCTTGCTTATATTTGCACAT 13028 Query 63582 CGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAG 63641 |||| || ||| | ||||| || || ||||| ||| || || | |||||| Sbjct 13029 TTCTTTAGTGTATCAAAAATGCCATCAATTGAGTCATCTGACATTTTGAGAATAAAACAA 13088 Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 ||||| || | ||| ||| || ||||| ||||| || |||| ||| || ||||| Sbjct 13089 GAGGACATCTGTGGGCGAAGAGTACCAGCATTGAATAATGTCGGAGTAGCATGAGTAAAA 13148 Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA-TCCCATTGATGAAT 63760 | || | ||| || || | || || ||||| |||| |||||| | |||| | || || Sbjct 13149 TACTTCTGAGAGAGCAGTTCATAAGTTTCAATTGCTGCATCTATATTACCATAG-TGGAT 13207 Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTT 63820 || | ||| | |||||| | ||| || || ||||| ||||| || | | | Sbjct 13208 ACCACAGGAGACTCTCATTAATAGGTGTTGTGGCCTTTCCACAATCTTATCATCGACCCG 13267 Query 63821 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63880 || || || ||| |||| | ||| |||||| ||||||||| ||| ||| || || | Sbjct 13268 CAGTAAATAAGATCTTTCTAGAGTCTTAAAAGCAAAATAGTCATATTCAAAATCACG-GC 13326 Query 63881 GTAAAT-AATAACCGAATT 63898 |||| |||||| || || Sbjct 13327 TAAAATCAATAACTGAGTT 13345 >seq196 Length=8782 Score = 250 bits (276), Expect = 3e-61 Identities = 618/910 (68%), Gaps = 41/910 (5%) Strand=Plus/Minus Query 33236 TTAAAAGTCAACATCTAAA--GAAAAATGATTGTCTT-CT--TGAGACATAACTCCCATT 33290 |||||| ||| |||||| | ||||| | | ||||| || |||| ||||||||| Sbjct 7593 TTAAAATTCAGCATCTAGATTGAAAATT--TGGTCTTTCTGATGAGCCATAACTCCTGCC 7536 Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 ||||||||||| | || ||||| || ||||| |||||||| |||| ||||| ||| Sbjct 7535 ATTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGA 7476 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| ||||||| ||||| || |||||||| | ||| || | | | || | | Sbjct 7475 TCCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGCAAACAGT 7416 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 || | ||| || || ||||| |||||| ||| | | | ||||||| || ||||| Sbjct 7415 AAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAGA 7356 Query 33471 TTAACTGG--AAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 | || || | || |||| ||| |||| |||||| || || | || ||||| Sbjct 7355 TCTACAGGTAATGAATCACA-TAA-AAATGTACGTTCAACTTCAACAGCTTCTGCTATAA 7298 Query 33529 TAAATCTAACGGTTTCTTCACTCGGTGGATG--TAATAAATG-TTTAAACATCAAACATG 33585 | | ||| | ||||| || || | || | |||| |||| | | |||||| Sbjct 7297 TTTCTTGAAC---TCTTTCACATGGAAGACGATTATTTAATGTTTTATAAAGTAAACATC 7241 Query 33586 CGAAAT-CGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCG 33644 | || | |||| || | ||| || |||||| |||| ||| |||||||| || | ||| Sbjct 7240 CAAAGTCCGCA-TGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCA 7182 Query 33645 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCGGAAAAGAAGAT 33703 ||||||| ||||| || |||||||||||||| | | | || | | || ||||| ||||| Sbjct 7181 GGCATTAATCCACGTTTCTTAAGCCAAAATATAGCA-CAAAAGCTGCCAGAAAACAAGAT 7123 Query 33704 TCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAACCGGCGCTGTCATGTATC 33761 ||||| |||||| |||| |||| | ||| ||| | || |||| | | || ||| Sbjct 7122 ACCTTCAACTGCACAAAAGCCAATTACTCTTTCTGCAAATGACCG--ATTATTATTCATC 7065 Query 33762 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33821 |||||| ||||| || ||||| |||| || || | | ||| || | ||| Sbjct 7064 CACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGTGATATTGCTTCAAAA 7005 Query 33822 AG---ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 || | | | || |||| |||| | ||| ||| || ||||| ||| || Sbjct 7004 AGCATTTGGCGATCTT--TTAC-ATCTGATATATATTGATCAATTAAAAGGGAATAAGTT 6948 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA-TCTAGCCTCGGTAAT 33937 || ||||| | || || || || |||||||| || | ||| |||||| || || Sbjct 6947 TCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATA-ATACATTCTAGCTTCTTCTAT 6889 Query 33938 CTGCA-CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996 || | || || || ||||| | | ||||| || || | || ||||||||||| |||| Sbjct 6888 TTGAATCTCCTTTAAAAAAT-TTACAGCTAAGTTCTCCATTACAATTCCATCACTAGCTG 6830 Query 33997 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT---GTTAGTTTATTCC 34053 ||||||| || || |||| ||| ||||||| |||| |||||| ||| | | || Sbjct 6829 CAAAAAATGCTAAGACATATTTAATAAAATGTTTT---TCTGGTTCCTTTAAACTTTCCC 6773 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 |||| | || || | | || ||| | ||||| | ||||||||||| || ||| | | Sbjct 6772 AATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTCTT 6713 Query 34114 TTTTATACAT 34123 |||| ||||| Sbjct 6712 TTTTGTACAT 6703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629806279028640