Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1249 280 1e-70 seq196 221 1e-52 >seq1249 Length=14599 Score = 280 bits (310), Expect = 1e-70 Identities = 1186/1850 (64%), Gaps = 60/1850 (3%) Strand=Plus/Plus Query 36796 GTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGC 36855 ||||||| ||||||||||| || || |||||| | || || |||||||||| Sbjct 11481 GTGAATTGTATAGGATTTGCAGCGCTTTGTGTTCTTAAGTAGTAAGCACCAGTTTTTAAA 11540 Query 36856 CCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATA 36915 ||| ||||||| || || |||||| | || ||||| || | | ||| | ||| Sbjct 11541 CCCTTCTTCCATCCATAGAAGTGCATAGAAGATAGCTTTGCATAGTTGGCATTTGCAATA 11600 Query 36916 TATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAA 36975 || || | | || ||| |||| || | | ||||| || || ||||| || | | Sbjct 11601 TAAATATTTAGAGACTGAGATTGACAAATGTATGGTCCTCTATCTGCCGCCATATCAATA 11660 Query 36976 ATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT---GGT 37032 | |||||| || ||||| || ||||| || | | | | ||||| ||| Sbjct 11661 ACTGCTTTTTGTCTAATTTCCCAGACGGTTTTGTACA---GGTCGCGAATATCTCGCGGT 11717 Query 37033 AAA---TCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTAT--GTCAT 37087 | | || | || ||||| | ||||| | || || || || ||| | | ||| Sbjct 11718 ATAGACTCAATATTTTGAACACTTCCATTGT-TAGCA--ATGATACTCTGTTTCAGTCTC 11774 Query 37088 TATTCCACATATTTCTACTT--ATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAA 37145 | ||| |||| | | | || | || || |||| | || ||||| ||||| || Sbjct 11775 TCATCC-CATAGTCCCAATTCAAGTAAATCATTCAACAAATGAGGATTCACAACAAAGAA 11833 Query 37146 ATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATT 37205 || ||||| ||||| | || ||||||||| ||| ||||||||| | ||||| Sbjct 11834 CTCCCCAGACAATACACGCCTATGATATATATTTGAGGTAAATGGTTCAAAGCTTTCATT 11893 Query 37206 ATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCT 37265 ||| | || || |||||||||||||| ||||||||||| |||| | | ||||| Sbjct 11894 ATTCCCTAGTAACTGAGATGTAGATGCGGTAGGCATTGGAGCTACCAACAACGAGTTTCT 11953 Query 37266 CAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG--GG 37323 | |||| || ||| ||| || ||| || ||| | ||| | ||| | || Sbjct 11954 AAGGCCATACTTAGCTATTTTCTCCTTCAGTAAATCCCAGTTCCAAAGTCCTGAGGAGGG 12013 Query 37324 TT---CTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATAT 37380 || | || ||| | |||| ||||||| | |||| |||| ||||| ||| | | | || Sbjct 12014 TTGCACATT--CCAGAGATCAAATTGTAGCAGACCTCTACTAGCTGGTGAACCTTGAAAT 12071 Query 37381 GTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATAT 37440 || ||||| || || || | | ||||| || ||||| | || || || ||||| ||| Sbjct 12072 GTTTCATAGGGACCATACTTCTCTGCTAGCTCACAACTTGCATCAAGAGCAGCATAGTAT 12131 Query 37441 ATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCC 37500 ||||| || || || | | ||||| | | | || |||| || ||| ||| | | Sbjct 12132 ATTGTCTCAAATATCTCAACATTTAGTTTCCTGGCATCTTTAGATTCATATGGATATCTC 12191 Query 37501 AATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTA 37560 |||| ||||| ||| || | ||| || || || | ||| | || |||||| || | Sbjct 12192 AATATCATAAAACAATCTGCAAGACCTTGTACTCCTAAACCAAGTGGCCTATGTCTCAGA 12251 Query 37561 TTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTT 37620 ||||| || | ||| | |||||||| ||| || | || ||||||||| Sbjct 12252 TTAGACCTCCTGCACTCTGGAATAGGATAATATCCACGATCAATAACTTCATTTAGATTC 12311 Query 37621 TTAACTAGTAT-TTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATTATT--- 37676 | | || ||| || || | | | ||| | || ||| ||||||| Sbjct 12312 CTTGTTGCTACCTTTACTACTTCATAT-AGCTTTTTAAAATCGAATTTCTTATTATCCCT 12370 Query 37677 ---AACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTT 37733 |||||| | | | |||||| | | ||||| || || || || | | | Sbjct 12371 ATCAACAAAACGAGGGAGCCCTATAGATGCCAAGTTACAAACTGCGACCTCGTTTGAACT 12430 Query 37734 ACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTG 37793 | || | | ||||| |||||||| ||||| || ||| | || || |||| ||| ||| Sbjct 12431 AGTATACTCCATAATTTCTGTACATAGATTGCTAGATTTTATCGTACCCAGATTTTGTTG 12490 Query 37794 ATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTG 37853 |||| ||| |||| | ||| ||||| ||| | || || ||| || ||||| Sbjct 12491 ATTGCTTTTACGATTAGCTGCATCCTTATAGCAAATAAATGGAGTACCTGTCTCAATTTG 12550 Query 37854 AGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTAAttttt----- 37908 | || | | | ||| |||||| |||||||| | | ||| | Sbjct 12551 TGACTGTAGCAATGCAAACCACAAACTTTGTGCTTTAA---TTGTTTTCCTACCGCGACC 12607 Query 37909 ttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATC--GCATA 37966 |||||| ||| || | | |||||||| ||||| | | ||||| ||||| |||| Sbjct 12608 TTCTTT--TTCATAGTGTTCATATAATTCTTTAAATTGGTCACCCCAGACATCTTGCATC 12665 Query 37967 ATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCA 38026 || || ||||| |||||||||| | ||| | | |||| || ||||| | |||| Sbjct 12666 --CCAGGGCATTCATCAGGACACATTAATGTCCAGTTTGCATCCTTCTCTACTCTCTCCA 12723 Query 38027 TAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCC 38086 | || | |||||||| ||||| ||| | ||||| ||| | ||| || || || | Sbjct 12724 TGAACAGATCAGGTATCCATAGTGCTGGAAATATATCACGGCATCTCATCTCCTCTTTAC 12783 Query 38087 CTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAA 38146 | ||||| |||| || ||| || || | ||| || ||||| ||||| | ||| | Sbjct 12784 CATGGTTCTTCCTTATCTCTATAAATTCCAAAACATCCGCATGCCAAGGTTCCAAATAGA 12843 Query 38147 TCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTAT 38206 | | ||| || ||||| | || || || | || ||| | |||| | ||||| Sbjct 12844 CAGCAAGTGCACCCTTCCTTTTTCCTCCACCTTGGTCAACATAACGTGCTGTATCATTAT 12903 Query 38207 ATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACC--GGATATATAAGT 38264 | | | | ||| || | || ||||||||| | || || |||| |||| ||| | Sbjct 12904 ACACACGCAGCATTGGAATTAAACCATTAGACCTACCATTAGTACCACGGATGTATGAT- 12962 Query 38265 ACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTG---ATAT 38321 || ||||||||||||| | | || |||| |||||| ||| || ||| |||| Sbjct 12963 -CCTGCAGCTCGTATATTAGAAACAGCCACCCCTAATCCACCAGCA-GTCTTGCTTATAT 13020 Query 38322 TAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAG 38381 | || |||| |||| |||||||| || || || || |||||| ||| || Sbjct 13021 T--TGCACATTTCTTTAGTGTATCAAAAATGCCATCAATTGAGTCATCTGACATTTTGAG 13078 Query 38382 TATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGC 38441 ||||||||| ||||| || || |||| || || || |||||||| |||| || Sbjct 13079 AATAAAACAAGAGGACATCTGTGGGCGAAGAGTACCAGCATTGAATAATGTCGGAGTAGC 13138 Query 38442 ATGTATGAACCATTTTTCCGACAAATAA--TTATATGTTTCTATTACATCATCTATATCA 38499 ||| | || || ||| || | | | | ||| ||||| ||| | ||||||||| | Sbjct 13139 ATGAGTAAA--ATACTTCTGAGAGAGCAGTTCATAAGTTTCAATTGCTGCATCTATATTA 13196 Query 38500 CCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTA 38559 || ||| ||||| || || ||||||| | |||||||| ||||| | || ||| Sbjct 13197 CCATAGTGGATACCACAGGAGACTCTCATTAATAGGTGTTGTGGCCTTTCCACAATCTTA 13256 Query 38560 TTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATA 38609 | || |||| ||| ||| |||||| || || | ||||||| Sbjct 13257 TCATCGACCCGCAGTAAATAAGATCTTTCTAGAGTCTTAAAAGCAAAATA 13306 >seq196 Length=8782 Score = 221 bits (244), Expect = 1e-52 Identities = 569/853 (67%), Gaps = 24/853 (3%) Strand=Plus/Minus Query 11340 TTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACT 11399 |||| |||||| |||||| || ||||| ||||| ||||||| || ||| ||| | Sbjct 7534 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 7475 Query 11400 CCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATA 11459 |||| | ||| ||||| |||||| | | ||| | | ||| | | || Sbjct 7474 CCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGCAAACAGTA 7415 Query 11460 ATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGAT 11519 | | ||| || || ||||| ||||| || | |||||| | | ||||||| || || |||| Sbjct 7414 AACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAGAT 7355 Query 11520 CCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCG 11579 | || || | | | | ||||| ||| | | ||| || || || || Sbjct 7354 CTACAGGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTATAAT-- 7297 Query 11580 ACGTTAT--AACTTCCTTAGATGGTGGATG--TAATAAATGTTTAA-ACATTAAACACGC 11634 || | |||| | | |||| || | || | ||||||| | | | |||||| | Sbjct 7296 ---TTCTTGAACTCTTTCACATGGAAGACGATTATTTAATGTTTTATAAAGTAAACATCC 7240 Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 ||| || ||| | |||||| |||||| ||||||||||||||||||||||||||| || Sbjct 7239 AAAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCAGG 7180 Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754 ||| ||||| ||||| || | ||||||||||||| ||| |||||||| || || || Sbjct 7179 CATTAATCCACGTTTCTTAAGCCAAAATATAGCACAAAAGCTGCCAGAAAACAAGATACC 7120 Query 11755 CTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCCATTT 11814 || || || ||| | | |||||||||| || || | || || ||||| || Sbjct 7119 TTCAACTGCACAAAAGCCAATTACTCTTTCTGCAAATGACCGATTATTATTCATCCACTT 7060 Query 11815 TCTGGCCCAATCAGCTTTCTTTTTTAC-GCATTCCATTGTTTCTATAGCGTTAAATAAAT 11873 | | ||||| || || || |||| || || | || | ||| || | | ||| Sbjct 7059 TGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATG-TGATATTGCTTCA---AAAA 7004 Query 11874 GCATTT---TTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTG 11930 |||||| ||| | |||| || |||| ||| ||||| | ||| |||| Sbjct 7003 GCATTTGGCGATCTTTTACATCTGATATATATTGATCAATTAAAAGGGAATAAGTTTCAC 6944 Query 11931 AATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACA-TCGTGCCTCTGAACACTGT 11989 ||||| | |||||||| |||||||||||||| | ||| || || ||| || Sbjct 6943 TGTGAATCTGCTCCATAGCAATTTGAAATCCATA-ATACATTCTAGCTTCTTCTATTTGA 6885 Query 11990 ACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAA 12049 | ||| |||| || | ||||| ||||| ||||||| |||||||||| ||||||| Sbjct 6884 ATCTCCTTTAAAAAATTTACAGCTAAGTTCTCCATTACAATTCCATCACTAGCTGCAAAA 6825 Query 12050 AATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCT 12109 ||||||| | || ||| ||||| | |||||| || |||| | |||||||| ||| Sbjct 6824 AATGCTAAGACATATTTAATAAAATGTTTTTCTGGTTCCTTTAAACTTTCCCAATC-TCT 6766 Query 12110 AAATCTTTTGA--TAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTAT 12167 || | ||| |||||||| ||||| | |||||||| || || || ||| | Sbjct 6765 -CATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTCTTTTTTGT 6707 Query 12168 ACATTTTCCAGAT 12180 ||||| ||| || Sbjct 6706 ACATTGACCACAT 6694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468516378266720