Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1249 329 4e-85 seq196 259 6e-64 >seq1249 Length=14599 Score = 329 bits (364), Expect = 4e-85 Identities = 1217/1888 (64%), Gaps = 34/1888 (2%) Strand=Plus/Plus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 |||||||| || ||| | ||| || || | || ||||| || ||||||| | Sbjct 11481 GTGAATTGTATAGGATTTGCAGCGCTTTGTGTTCTTAAGTAGTAAGCACCAGTTTTTAAA 11540 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || ||||||| || || |||||| | ||| || | ||| | | || ||| ||| Sbjct 11541 CCCTTCTTCCATCCATAGAAGTGCATAGAAGATAGCTTTGCATAGTTGGCATTTGCAATA 11600 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 | ||||| | ||| ||| |||| ||| | | ||| || ||||| ||||| | || Sbjct 11601 TAAATATTTAGAGACTGAGATTGACAAATGTATGGTCCTCTATCTGCCGCCATATCAATA 11660 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG 65077 | | |||||| ||||||||| | ||||| || | |||| ||||||| || | Sbjct 11661 ACTGCTTTTTGTCTAATTTCCCAGACGGTTTTGTACAGGTCGCG-AATATCTCGCGGTAT 11719 Query 65078 G---TTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA-TCTCATCAT 65133 | |||| |||| |||| | || || || || | || | |||| |||| Sbjct 11720 AGACTCAATATTTTGAACACTTCCATTGTTAGCAATGATACTCTGTTTCAGTCTC-TCAT 11778 Query 65134 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 65193 ||||| | || |||| | | | | ||| ||||| || || || || | Sbjct 11779 CCCATAGTCCCAATTCAAGTAAATCATTCAACAAATGAGGATTCACAACAAAGAACTCCC 11838 Query 65194 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTC 65253 |||||||||| | || | || ||||| |||| | ||||| | |||||||| | Sbjct 11839 CAGACAATACACGCCTATGATATATATTTGAGGTAAATGGTTCAAAGCTTTCATTATTCC 11898 Query 65254 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 65313 | | | |||| || ||||| || ||||| || || ||||| || |||||||| | Sbjct 11899 CTAGTAACTGAGATGTAGATGCGGTAGGCATTGGAGCTACCAACAACGAGTTTCTAAGGC 11958 Query 65314 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC----GACGGTACA 65369 | || | ||||| || || || ||||| |||||||| ||| || ||| Sbjct 11959 CATACTTAGCTATTTTCTCCTTCAGTAAATCCCAGTTCCAAAG-TCCTGAGGAGGGTTGC 12017 Query 65370 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCG 65429 || |||||| | ||| |||| || || ||| | |||| || Sbjct 12018 ACATTCCAGAGATCAAATTGTAGCAGACCTCTACTAGCTGGTGAACCTTGAAATGTTTCA 12077 Query 65430 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 65489 || || || | |||||| ||||| |||||||| || || | ||| | || || || || Sbjct 12078 TAGGGACCATACTTCTCTGCTAGCTCACAACTTGCATCAAGAGCAGCATAGTATATTGTC 12137 Query 65490 TCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 65548 || || |||| |||||| | | || || || ||| ||||||| | || | Sbjct 12138 TCAAATATCTCAACATTTAGTTTCCTG-GCATCTTTAGATTCATATGGATATCTCAATAT 12196 Query 65549 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 65608 ||||| ||||| | ||||| || || | ||| | || ||||||||| |||||| Sbjct 12197 CATAAAACAATCTGCAAGACCTTGTACTCCTAAACCAAGTGGCCTATGTCTCAGATTAGA 12256 Query 65609 GATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 65667 | | || ||||||||||||||||| | ||| |||| || ||| ||||| || Sbjct 12257 CCTC-CTGCACTCTGGAATAGGATAATATCCACGATCAATAACTTCATTTAGATTCCTTG 12315 Query 65668 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCAT-----CTATTAC 65722 ||| || || || || | || || |||||| ||| || || |||| | Sbjct 12316 TTGCTACCTTTACTACTTCATATAGCTTTTTAAAATCGAATTTCTTATTATCCCTATCAA 12375 Query 65723 AAACATGTTCAATGCA-ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 65781 || | | | | | |||||||| |||||||| || ||||| || | | | || Sbjct 12376 CAAAACGAGGGAGCCCTATAGATGCCAAGTTACAAACTGCGACCTCGTTTGAACTAGTAT 12435 Query 65782 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 65841 | | || || || || || ||||| ||| | || || || || | |||||||||||| | Sbjct 12436 ACTCCATAATTTCTGTACATAGATTGCTAGATTTTATCGTACCCAGATTTTGTTGATTGC 12495 Query 65842 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 65901 | || ||| ||||||||||| ||| ||||||||||| || ||||| || || | Sbjct 12496 TTTTACGATTAGCTGCATCCTTATAGCAAATAAATGGAGTACCTGTCTCAATTTGTGACT 12555 Query 65902 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTC--TTTTCTCT 65959 || | || ||| | | | || || ||| | || || | | |||| | Sbjct 12556 GTAGCAATGCAAACCACAAACTTTGTGCTTTAATTGT--TTTCCTACCGCGACCTTCTTT 12613 Query 65960 TTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 66017 ||| ||||||| ||| ||| || || | ||| ||||| |||| | || ||||| Sbjct 12614 TTC--ATAGTGTTCATATAATTCTTTAAATTGGTCACCCCAGACATCTTGCATCCCAGGG 12671 Query 66018 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 66077 |||||||| |||||||| || | ||| | | | || | || |||| | ||| || ||| Sbjct 12672 CATTCATCAGGACACATTAATGTCCAGTTTGCATCCTTCTCTACTCTCTCCATGAACAGA 12731 Query 66078 TCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 66137 ||||| ||||| || ||| ||||| ||| | | ||| ||||| || || ||| Sbjct 12732 TCAGGTATCCATAGTGCTGGAAATATATCACGGCATCTCATCTCCTCTTTACCATGGTTC 12791 Query 66138 TTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATA 66197 || | | || | || ||| || ||| |||||| |||||||| || | || | Sbjct 12792 TTCCTTATCTCTATAAATTCCAAAACATCCGCATGCCAAGGTTCCAAATAGACAGCAAGT 12851 Query 66198 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 66257 | || || ||| ||| || || || | || | || || | |||||| || | | Sbjct 12852 GCACCCTTCCTTTTTCCTCCACCTTGGTCAACATAACGTGCTGTATCATTATACACACGC 12911 Query 66258 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCA 66317 | ||||||||| | |||||| || ||||||| || || ||| || ||| || Sbjct 12912 AGCATTGGAATTAAACCATTAGACCTACCATTAGTACCACGGATGTATGATCCTGCAGCT 12971 Query 66318 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 66377 || |||||| || | | |||| ||| || || | || || ||| ||| Sbjct 12972 CGTATATTAGAAACAGCCACCCCTAATCCACCAGCAGTCTTGCTTATATTTGCACATTTC 13031 Query 66378 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437 |||| |||||| | ||||| || || ||||| ||| || || | |||||| Sbjct 13032 TTTAGTGTATCAAAAATGCCATCAATTGAGTCATCTGACATTTTGAGAATAAAACAAGAG 13091 Query 66438 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 66497 ||||| || | ||| ||| || ||||| ||||| || |||| ||| || ||||| | Sbjct 13092 GACATCTGTGGGCGAAGAGTACCAGCATTGAATAATGTCGGAGTAGCATGAGTAAAATAC 13151 Query 66498 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA-TCCCATTGATGAATTCC 66556 || | ||| || || | || || ||||| |||| |||||| | |||| | || || || Sbjct 13152 TTCTGAGAGAGCAGTTCATAAGTTTCAATTGCTGCATCTATATTACCATAG-TGGATACC 13210 Query 66557 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 66616 | ||| | |||||| | ||| || || ||||| || ||||| | | | || Sbjct 13211 ACAGGAGACTCTCATTAATAGGTGTTGTGGCCTTTCCACAATCTTATCATCGACCCGCAG 13270 Query 66617 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 66676 || || ||| |||| | ||| |||||| ||||||||| ||| ||| || || | | Sbjct 13271 TAAATAAGATCTTTCTAGAGTCTTAAAAGCAAAATAGTCATATTCAAAATCACG-GCTAA 13329 Query 66677 AAT-AATAACCGAGTTGAGTTTATCCTT 66703 ||| |||||| ||||| | | |||| || Sbjct 13330 AATCAATAACTGAGTTTAATCTATCTTT 13357 >seq196 Length=8782 Score = 259 bits (286), Expect = 6e-64 Identities = 622/909 (68%), Gaps = 39/909 (4%) Strand=Plus/Minus Query 35812 TTAAAAATCAACATCTAGA--GAAAAATGATTGTCTT-CT--TGAGACATAACTCCCATT 35866 |||||| ||| |||||||| ||||| | | ||||| || |||| ||||||||| Sbjct 7593 TTAAAATTCAGCATCTAGATTGAAAATT--TGGTCTTTCTGATGAGCCATAACTCCTGCC 7536 Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 ||||||||||| | || ||||| || ||||| ||||||||||||| |||||| ||| Sbjct 7535 ATTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGA 7476 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 ||||| |||| |||||||| | ||||| || | ||| || | | | || | | Sbjct 7475 TCCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGCAAACAGT 7416 Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046 || | ||| || |||||||| |||||| ||| | | | ||||||| || || || Sbjct 7415 AAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAGA 7356 Query 36047 TTAACTGG--AAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 36104 | || || | || |||| ||| |||| |||||| || || |||| ||||| Sbjct 7355 TCTACAGGTAATGAATCACA-TAA-AAATGTACGTTCAACTTCAACAGCTTCTGCTATAA 7298 Query 36105 TAGATATTACTGTTTCTTCACTCGGTGGA--TACAATAAATG-TTTAAACATCAAACATG 36161 | | ||| | ||||| || || | | |||| |||| | | |||||| Sbjct 7297 TTTCTTGAACTCT---TTCACATGGAAGACGATTATTTAATGTTTTATAAAGTAAACATC 7241 Query 36162 CGAAAT-CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 36220 | || | |||| || | ||| || |||||| |||| ||| || ||||| || | ||| Sbjct 7240 CAAAGTCCGCA-TGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCA 7182 Query 36221 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAAT 36279 ||||||| ||||| || |||||||||||||| | | |||| | | |||||||| || || Sbjct 7181 GGCATTAATCCACGTTTCTTAAGCCAAAATATAG-CACAAAAGCTGCCAGAAAACAAGAT 7123 Query 36280 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAACCGGCACTGTCATGTATC 36337 ||||| ||||| |||| |||| | ||| ||| | || |||| | | | || ||| Sbjct 7122 ACCTTCAACTGCACAAAAGCCAATTACTCTTTCTGCAAATGACCG--ATTATTATTCATC 7065 Query 36338 CACTTTTGAGCCCAATCGGCCTTCTTTTTTAC-ACAAGGCATTGTCTCTATAGCATTAAA 36396 |||||| ||||| || ||||| |||| || | | | ||| ||| || | ||| Sbjct 7064 CACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGT-GATATTGCTTCAAA 7006 Query 36397 GAG---ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 36453 || | | | || |||| |||| | |||| |||||| ||||| ||| | Sbjct 7005 AAGCATTTGGCGATCTT--TTAC-ATCTGATATATATTGATCAATTAAAAGGGAATAAGT 6949 Query 36454 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA-TCTAGCCTCGGTAA 36512 ||| ||||| | || || || ||||||||||| || | ||| |||||| || | Sbjct 6948 TTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATA-ATACATTCTAGCTTCTTCTA 6890 Query 36513 TCTGTA-CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 36571 | || | || || || ||||| | | ||||| || || | || ||||| ||||| ||| Sbjct 6889 TTTGAATCTCCTTTAAAAAAT-TTACAGCTAAGTTCTCCATTACAATTCCATCACTAGCT 6831 Query 36572 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTC-GTTTGGTGTTAGTTTATTCCA 36630 |||||||| || || |||| ||| ||||||| |||||| | || | ||| | | ||| Sbjct 6830 GCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTCTGGTTCCT-TTAAACTTTCCCA 6772 Query 36631 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 36690 ||| | || || | | || ||| | ||||| | ||||||||||| || ||| | || Sbjct 6771 ATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTCTTT 6712 Query 36691 TTTATACAT 36699 ||| ||||| Sbjct 6711 TTTGTACAT 6703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658160969343920