Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1249 419 3e-112 seq196 242 5e-59 >seq1249 Length=14599 Score = 419 bits (464), Expect = 3e-112 Identities = 1236/1884 (66%), Gaps = 26/1884 (1%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 |||||||| || ||| | ||| || || | || ||||| || ||||||| | Sbjct 11481 GTGAATTGTATAGGATTTGCAGCGCTTTGTGTTCTTAAGTAGTAAGCACCAGTTTTTAAA 11540 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || ||||||| ||||| |||||| | ||| || | ||| | | || ||| ||| Sbjct 11541 CCCTTCTTCCATCCATAGAAGTGCATAGAAGATAGCTTTGCATAGTTGGCATTTGCAATA 11600 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 | ||||| | ||| ||| |||| ||| | | ||| || ||||| ||||| | || Sbjct 11601 TAAATATTTAGAGACTGAGATTGACAAATGTATGGTCCTCTATCTGCCGCCATATCAATA 11660 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG 78956 | | |||||| ||||||||| | ||||| || | |||| ||||||| || | Sbjct 11661 ACTGCTTTTTGTCTAATTTCCCAGACGGTTTTGTACAGGTCGCG-AATATCTCGCGGTAT 11719 Query 78957 G---TTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA-TCTCTTCAT 79012 | |||| |||| |||| | || || || || | || | ||||| ||| Sbjct 11720 AGACTCAATATTTTGAACACTTCCATTGTTAGCAATGATACTCTGTTTCAGTCTCT-CAT 11778 Query 79013 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 79072 ||||| | || |||| | | | | ||| ||||| || || || || | Sbjct 11779 CCCATAGTCCCAATTCAAGTAAATCATTCAACAAATGAGGATTCACAACAAAGAACTCCC 11838 Query 79073 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTC 79132 |||||||||| | || | || ||||| |||| ||||||| | ||||||||| | Sbjct 11839 CAGACAATACACGCCTATGATATATATTTGAGGTAAATGGTTCAAAGCTTTCATTATTCC 11898 Query 79133 CCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 79192 | | | |||| || ||||| || ||||| || || ||||| || |||||||| | Sbjct 11899 CTAGTAACTGAGATGTAGATGCGGTAGGCATTGGAGCTACCAACAACGAGTTTCTAAGGC 11958 Query 79193 CGTA-TGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACA--- 79248 | || | | || ||||| || || || | ||||| | |||||| | || | | Sbjct 11959 CATACTTAGCT-ATTTTCTCCTTCAGTAAATCCCAGTTCCAAAGTCCTGAGGAGGGTTGC 12017 Query 79249 ACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCA 79308 |||||||| |||||| ||||||| | ||| ||||||| ||| ||| |||||||| Sbjct 12018 ACATTCCAGAGATCAAATTGTAGCAGACCTCTACTAGCTGGTGAACCTTGAAATGTTTCA 12077 Query 79309 TAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTT 79368 || || || | ||| || |||| |||||||| || || | || | || || || || Sbjct 12078 TAGGGACCATACTTCTCTGCTAGCTCACAACTTGCATCAAGAGCAGCATAGTATATTGTC 12137 Query 79369 TCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAG 79427 || || |||| ||| || | | || || ||| ||| ||||||| | || | Sbjct 12138 TCAAATATCTCAACATTTAGTTTCCTG-GCATCTTTAGATTCATATGGATATCTCAATAT 12196 Query 79428 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 79487 ||||| ||||| | ||||| || || | ||| | || ||||||||| |||||| Sbjct 12197 CATAAAACAATCTGCAAGACCTTGTACTCCTAAACCAAGTGGCCTATGTCTCAGATTAGA 12256 Query 79488 AATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGA 79546 | | || ||||||||||||||||| | ||| |||| || ||| |||||||| Sbjct 12257 CCTC-CTGCACTCTGGAATAGGATAATATCCACGATCAATAACTTCATTTAGATTCCTTG 12315 Query 79547 CTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCAT-----CTATTAC 79601 | ||| || || || || | ||| || |||||| ||| || |||| | Sbjct 12316 TTGCTACCTTTACTACTTCATATAGCTTTTTAAAATCGAATTTCTTATTATCCCTATCAA 12375 Query 79602 AAACATGTTCAA-CGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 79660 || | | | | | | |||||||| |||||||| || ||||| || | | | || Sbjct 12376 CAAAACGAGGGAGCCCTATAGATGCCAAGTTACAAACTGCGACCTCGTTTGAACTAGTAT 12435 Query 79661 ATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTAC 79720 | | || ||||| || || || || ||| | || || || || | |||||||||||| | Sbjct 12436 ACTCCATAATTTCTGTACATAGATTGCTAGATTTTATCGTACCCAGATTTTGTTGATTGC 12495 Query 79721 TCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATT 79780 | || ||| ||||||||||| ||| || |||||||| || ||||| || || | Sbjct 12496 TTTTACGATTAGCTGCATCCTTATAGCAAATAAATGGAGTACCTGTCTCAATTTGTGACT 12555 Query 79781 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTT 79840 || | || ||| | | | || || ||| | | | | |||| ||| Sbjct 12556 GTAGCAATGCAAACCACAAACTTTGTGCTTTAATTGTTTTCCTACCGCGACCTTCTTTTT 12615 Query 79841 CGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATT 79900 | || ||| ||||||| || || | ||| ||||| ||||| | | ||||| |||| Sbjct 12616 CATAGTGTTCATATAATTCTTTAAATTGGTCACCCCAGACATCTTGCATCCCAGGGCATT 12675 Query 79901 CGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAG 79960 | ||||||||||| || | ||| | | |||| | || ||||| | ||| || ||||||| Sbjct 12676 CATCAGGACACATTAATGTCCAGTTTGCATCCTTCTCTACTCTCTCCATGAACAGATCAG 12735 Query 79961 GAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTT 80020 | ||||| || ||| ||||| ||| | | ||| |||||| || || ||||| Sbjct 12736 GTATCCATAGTGCTGGAAATATATCACGGCATCTCATCTCCTCTTTACCATGGTTCTTCC 12795 Query 80021 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 80080 | | || | || ||| || ||| | |||||| |||||||| || | || | | | Sbjct 12796 TTATCTCTATAAATTCCAAAACATCCGCATGCCAAGGTTCCAAATAGACAGCAAGTGCAC 12855 Query 80081 CCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 80140 || | ||| ||| || || || | || | || || | |||||| || | || || Sbjct 12856 CCTTCCTTTTTCCTCCACCTTGGTCAACATAACGTGCTGTATCATTATACACACGCAGCA 12915 Query 80141 TTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAA 80200 ||||||| | |||||| || ||||||| || || ||| || ||| || || | Sbjct 12916 TTGGAATTAAACCATTAGACCTACCATTAGTACCACGGATGTATGATCCTGCAGCTCGTA 12975 Query 80201 TATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 80260 ||||| || | | |||| ||| || || | || || ||| ||| |||| Sbjct 12976 TATTAGAAACAGCCACCCCTAATCCACCAGCAGTCTTGCTTATATTTGCACATTTCTTTA 13035 Query 80261 ACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACA 80320 |||||| | ||||| || || ||||| ||| || || | |||||| |||| Sbjct 13036 GTGTATCAAAAATGCCATCAATTGAGTCATCTGACATTTTGAGAATAAAACAAGAGGACA 13095 Query 80321 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 80380 | || | ||| ||| || ||||| ||||| || |||| ||| || ||||| | || | Sbjct 13096 TCTGTGGGCGAAGAGTACCAGCATTGAATAATGTCGGAGTAGCATGAGTAAAATACTTCT 13155 Query 80381 CAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATA-TCCCATTGATGAATTCCTACC 80439 ||| || || | || || ||||| |||| |||||| | |||| | || || || Sbjct 13156 GAGAGAGCAGTTCATAAGTTTCAATTGCTGCATCTATATTACCATAG-TGGATACCACAG 13214 Query 80440 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAG 80499 | ||| | |||||| | ||| || || ||||| || ||||| | || | || || Sbjct 13215 GAGACTCTCATTAATAGGTGTTGTGGCCTTTCCACAATCTTATCATCGACCCGCAGTAAA 13274 Query 80500 TAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT- 80558 |||||| |||| | ||| |||||| ||||||||| ||| ||| || || | |||| Sbjct 13275 TAAGATCTTTCTAGAGTCTTAAAAGCAAAATAGTCATATTCAAAATCACG-GCTAAAATC 13333 Query 80559 AATAACCGAGTTGAGTTTATCCTT 80582 |||||| ||||| | | |||| || Sbjct 13334 AATAACTGAGTTTAATCTATCTTT 13357 >seq196 Length=8782 Score = 242 bits (268), Expect = 5e-59 Identities = 615/907 (68%), Gaps = 35/907 (4%) Strand=Plus/Minus Query 49614 TTAAAAGTCAACATCTAGA--GAAAAATGATTATCTTCT--TGAGACATAACTCCCATTT 49669 |||||| ||| |||||||| ||||| | | | |||| |||| ||||||||| Sbjct 7593 TTAAAATTCAGCATCTAGATTGAAAATTTGGTCT-TTCTGATGAGCCATAACTCCTGCCA 7535 Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729 ||||||||||| | || ||||| || ||||| |||||||| |||| ||||| ||| | Sbjct 7534 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 7475 Query 49730 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 49789 |||| ||||||| ||||| || ||||| || | ||| || | | | || | | | Sbjct 7474 CCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGCAAACAGTA 7415 Query 49790 ATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 49849 | | ||| || |||||||| |||||| ||| | | | ||||||| || || || | Sbjct 7414 AACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAGAT 7355 Query 49850 TAACTGGAA--GAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 49907 || || | || | || ||| |||| |||||| || || |||| |||||| Sbjct 7354 CTACAGGTAATGAATCACA-TAA-AAATGTACGTTCAACTTCAACAGCTTCTGCTATAAT 7297 Query 49908 AGATCTAACGGTTTCTTCACTCGGTGGATGC--AATAAATGTTTAA-ACATCAAACATGC 49964 | ||| |||| || || || | | | ||||||| | | | |||||| | Sbjct 7296 TTCTTGAACTCTTTC---ACATGGAAGACGATTATTTAATGTTTTATAAAGTAAACATCC 7240 Query 49965 GAAATC-GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 50023 || || ||| || | ||| || |||||| |||||||| || ||||| || | ||| | Sbjct 7239 AAAGTCCGCA-TGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCAG 7181 Query 50024 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAAGATT 50082 |||||| ||||| || |||||||||||||| | | |||| | |||||||| ||||| Sbjct 7180 GCATTAATCCACGTTTCTTAAGCCAAAATATAG-CACAAAAGCTGCCAGAAAACAAGATA 7122 Query 50083 CCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG-TCATGTATCCA 50141 ||||| ||||| |||| ||| | ||| ||| || || || | | || ||||| Sbjct 7121 CCTTCAACTGCACAAAAGCCAATTACTCTTTCTGCA-AATGACCGATTATTATTCATCCA 7063 Query 50142 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 50201 |||| ||||| || ||||| |||| || || | | ||| || | ||| || Sbjct 7062 CTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGTGATATTGCTTCAAAAAG 7003 Query 50202 A---TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 50258 | | | || |||| |||| | ||| ||| || ||||| ||| |||| Sbjct 7002 CATTTGGCGATCTT--TTAC-ATCTGATATATATTGATCAATTAAAAGGGAATAAGTTTC 6946 Query 50259 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT-CTAGCCTCGGTAATCT 50317 ||||| | || || || || |||||||| || | |||| ||||| || || | Sbjct 6945 ACTGTGAATCTGCTCCATAGCAATTTGAAATCCATA-ATACATTCTAGCTTCTTCTATTT 6887 Query 50318 GCA-CTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376 | | || || || ||||| | ||||||| || || | || ||||| ||||| |||||| Sbjct 6886 GAATCTCCTTTAAAAAATT-TACAGCTAAGTTCTCCATTACAATTCCATCACTAGCTGCA 6828 Query 50377 AAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGT--GTTAGTTTATTCCAAT 50434 ||||| || || |||| ||| |||||||||||||| ||| | ||| | | ||||| Sbjct 6827 AAAAATGCTAAGACATATTTAATAAAATGTTTTTC--TGGTTCCTTTAAACTTTCCCAAT 6770 Query 50435 CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 50494 | | || || | | || ||||| ||||| | ||||||||||| || ||| | |||| Sbjct 6769 CTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTCTTTTT 6710 Query 50495 TATACAT 50501 | ||||| Sbjct 6709 TGTACAT 6703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718255889118320