Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq196 259 5e-64 >seq196 Length=8782 Score = 259 bits (286), Expect = 5e-64 Identities = 581/863 (67%), Gaps = 31/863 (4%) Strand=Plus/Minus Query 13582 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13641 |||| |||||| |||| ||| ||||| |||||||||||||||| | ||| ||| | Sbjct 7534 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 7475 Query 13642 CCATAAAATCAAATGGATTTATTGACATA--AACACTTTATCACAACCTAGTTCTAATAG 13699 |||| ||||||||||||| | ||||| | ||||| ||| | |||| | || || Sbjct 7474 CCATCCAATCAAATGGATTCGT-GACATTGTATAACTTTGGAACATC-TAGTGCAAACAG 7417 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 ||| | |||||||| ||| ||||||||||| | |||||| | ||||||| || || || Sbjct 7416 TAAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAG 7357 Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 | |||||| | | || ||||||| ||| | ||||| ||| |||||| Sbjct 7356 ATCTACAGGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTATAAT 7297 Query 13820 AATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAA-AAATTAAACACGCAA 13878 | || | ||| | | || ||| |||| |||||| | ||| |||||| ||| Sbjct 7296 TTCTTGAACTCTTTCACATGGAAGACGATTATTTA-ATGTTTTATAAAGTAAACATCCAA 7238 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 | || ||||| || ||||||||| || ||||| || |||||||||||||| |||| Sbjct 7237 AGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCAGGCA 7178 Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCT 13998 | ||||| ||||| || | ||||||||| ||| ||| || ||||| || || || | Sbjct 7177 TTAATCCACGTTTCTTAAGCCAAAATATAGCACAAAAGCTGCCAGAAAACAAGATACCTT 7118 Query 13999 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATT 14058 |||||||| ||| | |||| || |||| |||| || || || ||| ||||| | Sbjct 7117 CAACTGCACAAAAGCCAATTACTCTTTCTGCAAATGACCGATTATTATTC---ATCCACT 7061 Query 14059 TTCTAGCCCATTCAGAtttttttttAA-------TAAA----ATCCATTGTTTCAATAGC 14107 || | |||||||| | || |||||| |||| || |||| ||||| Sbjct 7060 TTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGTGAT--ATTGCTTCAA---- 7007 Query 14108 ATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14167 ||| | | | ||| |||| | ||| || ||| |||||| | | | ||| Sbjct 7006 ---AAAGCATTTGGCGATCT-TTTA-CATCTGATATATATTGATCAATTAAAAGGGAATA 6952 Query 14168 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGA 14227 ||||| ||| || | |||||||| || ||||| |||||| | ||||||||| Sbjct 6951 AGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATAATACATTCTAGCTTCTTC 6892 Query 14228 CCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287 ||| | ||| |||| || | || || || || | || || ||||||||||| Sbjct 6891 TATTTGAATCTCCTTTAAAAAATTTACAGCTAAGTTCTCCATTACAATTCCATCACTAGC 6832 Query 14288 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCA 14347 |||||||||||| || | | ||||||||| | || ||| | || | ||| ||| Sbjct 6831 TGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTCTGGTTCCTTTAAACTTTCCCA 6772 Query 14348 ATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14407 ||| | |||| | | ||||| || || | |||||||| || | |||| Sbjct 6771 ATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTCTTT 6712 Query 14408 TTTATACATTACCCATATTTCTT 14430 ||| |||||| ||| ||| ||| Sbjct 6711 TTTGTACATTGACCACATTACTT 6689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479719376889200