Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq196 269 3e-67 >seq196 Length=8782 Score = 269 bits (298), Expect = 3e-67 Identities = 585/857 (68%), Gaps = 19/857 (2%) Strand=Plus/Minus Query 13370 TTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTT 13429 |||| |||||| |||| ||| |||||||||||||||||||||| | ||| ||| | Sbjct 7534 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 7475 Query 13430 CCATAAAATCGAATGGATTTGTTGACATA--AACACTTTATCACAACCTAGTTCTAATAA 13487 |||| |||| |||||||| || ||||| | ||||| ||| | |||| | || | Sbjct 7474 CCATCCAATCAAATGGATTCGT-GACATTGTATAACTTTGGAACATC-TAGTGCAAACAG 7417 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547 ||| | |||||||| ||| ||||||||||| | |||||| | ||||||| || || || Sbjct 7416 TAAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAG 7357 Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 | |||||| | | || | ||||||| ||| | ||||| || |||||| Sbjct 7356 ATCTACAGGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTATAAT 7297 Query 13608 AATCTT-AATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAA-AAATTAAACACGCA 13665 |||| || | ||| | | || ||| |||| |||||| | ||| |||||| || Sbjct 7296 T-TCTTGAACTCTTTCACATGGAAGACGATTATTTA-ATGTTTTATAAAGTAAACATCCA 7239 Query 13666 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13725 || || ||||| || ||||||||| || ||||| || |||||||||||||| ||| Sbjct 7238 AAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCAGGC 7179 Query 13726 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATATTCC 13784 || ||||| ||||| || | ||||||||| ||| | || | | || ||||| || || || Sbjct 7178 ATTAATCCACGTTTCTTAAGCCAAAATATAGCA-CAAAAGCTGCCAGAAAACAAGATACC 7120 Query 13785 CTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCA 13844 ||||||||| ||| | |||| || |||| |||| || || || || ||||| Sbjct 7119 TTCAACTGCACAAAAGCCAATTACTCTTTCTGCAAATGACCGATTATTATT---CATCCA 7063 Query 13845 TTTTCTAGCCCATTCAGAtttttttttAA-TAAAATCCATTGTTTCGATTGCATTGAATA 13903 ||| | |||||||| | || |||||| | | || | ||||| || || | Sbjct 7062 CTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATG-TGATATTGC-TTCAAAA 7005 Query 13904 A--ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 13961 | || || ||||| | ||| || ||| |||||| | | | ||| |||| Sbjct 7004 AGCAT-TTGGCGATCTTTTACATCTGATATATATTGATCAATTAAAAGGGAATAAGTTTC 6946 Query 13962 AGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTG 14021 | ||| || | || ||||| || ||||| |||||| | |||||||||| ||| Sbjct 6945 ACTGTGAATCTGCTCCATAGCAATTTGAAATCCATAATACATTCTAGCTTCTTCTATTTG 6886 Query 14022 TACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAA 14081 | |||| |||| || | || ||||| || | ||||| ||||||||||||||||| Sbjct 6885 AATCTCCTTTAAAAAATTTACAGCTAAGTTCTCCATTACAATTCCATCACTAGCTGCAAA 6826 Query 14082 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGC 14141 |||||| || | | ||||||||| | || ||| | || | ||| |||||| Sbjct 6825 AAATGCTAAGACATATTTAATAAAATGTTTTTCTGGTTCCTTTAAACTTTCCCAATCTCT 6766 Query 14142 TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14201 | |||| | | ||||| || || | |||||||| || | ||||||| || Sbjct 6765 CATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTCTTTTTTGTA 6706 Query 14202 CATTACCCATATTTCTT 14218 |||| ||| ||| ||| Sbjct 6705 CATTGACCACATTACTT 6689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478580197366320