Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1249 342 7e-89 seq196 253 3e-62 >seq1249 Length=14599 Score = 342 bits (378), Expect = 7e-89 Identities = 1189/1838 (65%), Gaps = 30/1838 (2%) Strand=Plus/Plus Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908 || ||||||| ||| ||||||| || || |||||| | ||| || | |||| | Sbjct 11529 CCAGTTTTTAAACCCTTCTTCCATCCATAGAAGTGCATAGAAGATAGCTTTGCATAGTTG 11588 Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968 | || || || | |||||| | |||||| |||| ||| | | ||| || ||||| Sbjct 11589 GCATTTGCAATATAAATATTTAGAGACTGAGATTGACAAATGTATGGTCCTCTATCTGCC 11648 Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAAT 71027 ||||| | || | | |||||| ||||||||| | ||||| || | |||| ||| Sbjct 11649 GCCATATCAATAACTGCTTTTTGTCTAATTTCCCAGACGGTTTTGTACAGGTCGCG-AAT 11707 Query 71028 ATCTTCTGGAAGG---TTTGTATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTT 71084 |||| || | | |||| |||| |||| | ||||| || || | ||| Sbjct 11708 ATCTCGCGGTATAGACTCAATATTTTGAACACTTCCATTGTTAGCAATGATACTCTGTTT 11767 Query 71085 GA-TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTA 71143 | ||||| ||| ||||| | || |||| | | | | ||||||||| || | Sbjct 11768 CAGTCTCT-CATCCCATAGTCCCAATTCAAGTAAATCATTCAACAAATGAGGATTCACAA 11826 Query 71144 CTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTG 71203 | || || ||||||||||| | | | || ||||| |||| | ||||| | Sbjct 11827 CAAAGAACTCCCCAGACAATACACGCCTATGATATATATTTGAGGTAAATGGTTCAAAGC 11886 Query 71204 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGAC 71263 |||||||| || | | |||| || ||||| || ||||| || || ||||| | || Sbjct 11887 TTTCATTATTCCCTAGTAACTGAGATGTAGATGCGGTAGGCATTGGAGCTACCAACA-AC 11945 Query 71264 TA-TTTCTAAGACCATG-TGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATC 71321 | |||||||| |||| | | | ||||| || || || | ||||| |||||||| || Sbjct 11946 GAGTTTCTAAGGCCATACTTAGCT-ATTTTCTCCTTCAGTAAATCCCAGTTCCAAAG-TC 12003 Query 71322 C----GATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATC 71377 | || ||| || | || ||||||| ||| | Sbjct 12004 CTGAGGAGGGTTGCACATTCCAGAGATCAAATTGTAGCAGACCTCTACTAGCTGGTGAAC 12063 Query 71378 CTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTC 71437 || | |||| || || || || | || || ||||| |||||||| || || | || Sbjct 12064 CTTGAAATGTTTCATAGGGACCATACTTCTCTGCTAGCTCACAACTTGCATCAAGAGCAG 12123 Query 71438 CATAATAAATGGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCCGGGCTATCAAAT 71496 |||| || || || || || |||| ||| || | | || || || ||| || Sbjct 12124 CATAGTATATTGTCTCAAATATCTCAACATTTAGTTTCCTG-GCATCTTTAGATTCATAT 12182 Query 71497 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTG 71556 ||||| | || | ||||| ||||| | ||||| || || | ||| | || || Sbjct 12183 GGATATCTCAATATCATAAAACAATCTGCAAGACCTTGTACTCCTAAACCAAGTGGCCTA 12242 Query 71557 TGTCTCTTATTAGAAATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTT 71615 |||||| |||||| | | || ||||||||||||||||| | ||| |||| || Sbjct 12243 TGTCTCAGATTAGACCTC-CTGCACTCTGGAATAGGATAATATCCACGATCAATAACTTC 12301 Query 71616 ATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCC 71675 ||| ||||| || | ||| || || || || | ||| || |||||| ||| || Sbjct 12302 ATTTAGATTCCTTGTTGCTACCTTTACTACTTCATATAGCTTTTTAAAATCGAATTTCTT 12361 Query 71676 AT-----CTATTACAAACACGTTCAAGGCA-ACAGATGCCAGATTACAAACGGCTACCTC 71729 || |||| | || ||| || | | |||||||| |||||||| || ||||| Sbjct 12362 ATTATCCCTATCAACAAAACGAGGGAGCCCTATAGATGCCAAGTTACAAACTGCGACCTC 12421 Query 71730 ATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAA 71789 || | | | ||| | |||||||| || || ||||| ||| | || || || || | Sbjct 12422 GTTTGAACTAGTATACTCCATAATTTCTGTACATAGATTGCTAGATTTTATCGTACCCAG 12481 Query 71790 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGT 71849 |||||||||||| || || ||| ||||||||||| |||||| |||||||| || Sbjct 12482 ATTTTGTTGATTGCTTTTACGATTAGCTGCATCCTTATAGCAAATAAATGGAGTACCTGT 12541 Query 71850 TTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTA 71909 ||||| || || | || | || ||| | | | || || ||| | ||| | Sbjct 12542 CTCAATTTGTGACTGTAGCAATGCAAACCACAAACTTTGTGCTTTAATTGTTTTCCTACC 12601 Query 71910 TCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTC 71969 | |||| |||| || ||| ||||||| || || | ||| ||||| ||| | Sbjct 12602 GCGACCTTCTTTTTCATAGTGTTCATATAATTCTTTAAATTGGTCACCCCAGACATCTTG 12661 Query 71970 TAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTT 72029 | ||||| ||||||| |||||||| |||| ||| | | |||| | | ||||| | Sbjct 12662 CATCCCAGGGCATTCATCAGGACACATTAATGTCCAGTTTGCATCCTTCTCTACTCTCTC 12721 Query 72030 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTT 72089 ||| || |||||||| ||||| || ||| ||||| ||| | | ||| |||||| || Sbjct 12722 CATGAACAGATCAGGTATCCATAGTGCTGGAAATATATCACGGCATCTCATCTCCTCTTT 12781 Query 72090 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 72149 || ||||| | | || | || ||| || ||| | |||||| |||||||| || Sbjct 12782 ACCATGGTTCTTCCTTATCTCTATAAATTCCAAAACATCCGCATGCCAAGGTTCCAAATA 12841 Query 72150 TATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 72209 | || | | ||| || ||| ||| || || || | || | || || | ||| Sbjct 12842 GACAGCAAGTGCACCCTTCCTTTTTCCTCCACCTTGGTCAACATAACGTGCTGTATCATT 12901 Query 72210 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 72269 ||| || | || ||||||||| | |||||| || |||||| || || ||| || Sbjct 12902 ATACACACGCAGCATTGGAATTAAACCATTAGACCTACCATTAGTACCACGGATGTATGA 12961 Query 72270 TCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329 ||| || || ||||| || | | |||| ||| || || | || || Sbjct 12962 TCCTGCAGCTCGTATATTAGAAACAGCCACCCCTAATCCACCAGCAGTCTTGCTTATATT 13021 Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 72389 ||| ||| |||| |||||| | ||||| || || ||||| ||| || || | Sbjct 13022 TGCACATTTCTTTAGTGTATCAAAAATGCCATCAATTGAGTCATCTGACATTTTGAGAAT 13081 Query 72390 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 72449 |||||| ||||| || | ||| ||| || ||||| ||||| || |||| ||| || Sbjct 13082 AAAACAAGAGGACATCTGTGGGCGAAGAGTACCAGCATTGAATAATGTCGGAGTAGCATG 13141 Query 72450 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATA-TCCCATT 72508 ||||| | || | ||| || || | || || ||||| |||| |||||| | |||| Sbjct 13142 AGTAAAATACTTCTGAGAGAGCAGTTCATAAGTTTCAATTGCTGCATCTATATTACCATA 13201 Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTAT 72568 | || || || | ||| | |||||| | || || || ||||| || ||||| | || Sbjct 13202 G-TGGATACCACAGGAGACTCTCATTAATAGGTGTTGTGGCCTTTCCACAATCTTATCAT 13260 Query 72569 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 72628 | || || || ||| |||| | ||| |||||| ||||||||| ||| ||| | Sbjct 13261 CGACCCGCAGTAAATAAGATCTTTCTAGAGTCTTAAAAGCAAAATAGTCATATTCAAAAT 13320 Query 72629 CTCGTTCGTAAAT-AATAACCGAATTGAGTTTATCCTT 72665 | || | |||| |||||| || || | | |||| || Sbjct 13321 CACG-GCTAAAATCAATAACTGAGTTTAATCTATCTTT 13357 >seq196 Length=8782 Score = 253 bits (280), Expect = 3e-62 Identities = 623/911 (68%), Gaps = 43/911 (5%) Strand=Plus/Minus Query 41719 TTAAAAGTCAACATCTAAA--GAAAAATGATTGTCTT-CT--TGAGACATAACTCCCATT 41773 |||||| ||| |||||| | ||||| | | ||||| || |||| ||||||||| Sbjct 7593 TTAAAATTCAGCATCTAGATTGAAAATT--TGGTCTTTCTGATGAGCCATAACTCCTGCC 7536 Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 ||||||||||| | || ||||| || ||||| ||||| || |||| ||||| ||| Sbjct 7535 ATTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGA 7476 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| ||||||| ||||| || ||||| || | ||| || | | | || | | Sbjct 7475 TCCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGCAAACAGT 7416 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 || | ||| || | ||||| |||||| ||| | | | ||||||| || || || Sbjct 7415 AAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAGA 7356 Query 41954 TTAACTGGAA--GAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 | || || | || |||| ||| |||| |||||| || || |||| ||||| Sbjct 7355 TCTACAGGTAATGAATCACA-TAA-AAATGTACGTTCAACTTCAACAGCTTCTGCTATAA 7298 Query 42012 TAGATCTT--ACTGTTTCTTCACTCGGTG--GATACAATAAATGTTTAA-ACATCAAACA 42066 | |||| ||| |||| || | | | ||| | | ||||||| | | | ||||| Sbjct 7297 TT--TCTTGAACTCTTTCA-CA-TGGAAGACGATT-ATTTAATGTTTTATAAAGTAAACA 7243 Query 42067 TGCGAAATC-GCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTC 42125 | | || || ||| || | ||| ||||||||| |||| ||| || ||||| || | || Sbjct 7242 TCCAAAGTCCGCA-TGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATC 7184 Query 42126 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAAG 42184 | ||||||| ||||| || |||||||||||||||| | |||| | | |||||||| ||| Sbjct 7183 CAGGCATTAATCCACGTTTCTTAAGCCAAAATATAG-CACAAAAGCTGCCAGAAAACAAG 7125 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAACCGGCACTGTCATGTA 42242 || ||||| ||||| |||| |||| | ||| ||| | || |||| | | | || | Sbjct 7124 ATACCTTCAACTGCACAAAAGCCAATTACTCTTTCTGCAAATGACCG--ATTATTATTCA 7067 Query 42243 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 42302 |||||||| ||||| || ||||| |||| || || | | ||| || | || Sbjct 7066 TCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGTGATATTGCTTCAA 7007 Query 42303 AGAG---ATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACA 42359 | || | | | || |||| |||| | |||| ||| || ||||| ||| Sbjct 7006 AAAGCATTTGGCGATCTT--TTAC-ATCTGATATATATTGATCAATTAAAAGGGAATAAG 6950 Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA-TCTGGCCTCGGTA 42418 |||| ||||| | || || || || |||||||| || | ||| ||| || || Sbjct 6949 TTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATA-ATACATTCTAGCTTCTTCT 6891 Query 42419 ACCTGTA-CTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 | || | || || || ||||| | ||||||| || || | || ||||| ||||| || Sbjct 6890 ATTTGAATCTCCTTTAAAAAAT-TTACAGCTAAGTTCTCCATTACAATTCCATCACTAGC 6832 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTC--GTCCGGTGTTAATTTATTC 42535 ||||||||| || || |||| ||| ||||||| |||||| || | |||| | | | Sbjct 6831 TGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTCTGGTTC--CTTTAAACTTTCC 6774 Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 ||||| | || || | | || ||||| |||||| | ||||||||||| |||||| | Sbjct 6773 CAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTCT 6714 Query 42596 TTTTTATACAT 42606 ||||| ||||| Sbjct 6713 TTTTTGTACAT 6703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671127136272880