Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq581 122 6e-23 >seq581 Length=7318 Score = 122 bits (134), Expect = 6e-23 Identities = 165/229 (72%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 43893 AACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGT 43952 |||| ||||| || | ||| || ||||| || || | || || |||||||||||||| Sbjct 1173 AACCACCTCTTAAACGTAAAACTAAATGAAGGTTGAT-TCCTTCTGAATATTATAATCAG 1231 Query 43953 TTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 ||| || |||| || | |||||| || ||||| || || | ||| || || | | Sbjct 1232 ATAAAGTCCGACCATCCTCAAGTTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGTG 1291 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | |||||||||||| |||||| || || | ||| |||||| | || || | Sbjct 1292 GAATCCCTTCTTTATCTTGAATTTTAGCCTTTACATTTTCAATAGTATCAGATGGTTCAA 1351 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || ||||||||||| ||||||||||||||||| || ||||| Sbjct 1352 CTTCAAGTGTTATTGTTTTACCCGTTAAAGTCTTCACAAAAATCTGCAT 1400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354771382300824