Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq196 179 3e-40 >seq196 Length=8782 Score = 179 bits (198), Expect = 3e-40 Identities = 562/849 (66%), Gaps = 31/849 (4%) Strand=Plus/Minus Query 12861 TTTGATATTC-GCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 |||| ||||| |||| ||| ||| ||||||||||| ||||| |||| ||| |||||| Sbjct 7534 TTTGGTATTCAGCTA-CTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGA 7476 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTT-TTTACACC--CTAATTCTAGT 12976 ||||| |||| || ||||| | ||| | |||| ||| | | ||| | | | Sbjct 7475 TCCATCCAATCAAATGGATTCGTG--ACATT-GTATAACTTTGGAACATCTAGTGCAAAC 7419 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 | || | ||||||||||| || || || || |||||| | | ||||| || || Sbjct 7418 AGTAAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATG 7359 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096 | | |||||| | | || |||||| | ||| | ||||| ||||| | Sbjct 7358 AGATCTACAGGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTATA 7299 Query 13097 ATGTCTCTTATTACGTTCTCTAATGGAGGAT--TTGATAGATGCTTAA-ACATCATACAT 13153 || ||| | | | ||| | ||||| || || | ||| || | | | | |||| Sbjct 7298 ATTTCTTGAACT-CTTTCAC--ATGGAAGACGATTATTTAATGTTTTATAAAGTAAACAT 7242 Query 13154 GCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCC 13213 |||| || || | |||||||||||| |||||| || || |||||||||| || Sbjct 7241 CCAAAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCA 7182 Query 13214 GGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATT 13273 ||||| | || ||||| |||| ||||||||||||| ||| || ||||| || || Sbjct 7181 GGCATTAATCCACGTTTCTTAAGCCAAAATATAGCACAAAAGCTGCCAGAAAACAAGATA 7122 Query 13274 CCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATC 13333 ||||||||||| ||| | || | ||||| || | | | ||| ||| || ||| Sbjct 7121 CCTTCAACTGCACAAAAGCCAATTACTCTTTCTGCAAATGACCGATTATTATTC---ATC 7065 Query 13334 CACTTTCTGGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTCATATTTTCTATTGCGTTAAA 13392 |||||| | ||||| | ||| || |||||| || | | | || | |||||| | || Sbjct 7064 CACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGT-AAATGTGATATTGCTTCAA- 7007 Query 13393 TAAATAAttt-----ttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATAC 13447 ||| |||| | || |||| ||| | ||||| ||| || || | | ||| Sbjct 7006 -AAAGCATTTGGCGATCTT--TTAC-ATCTGATATATATTGATCAATTAAAAGGGAATAA 6951 Query 13448 ATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGAT 13507 |||| ||||| | ||||| || ||||| || |||||| | |||||| ||| | Sbjct 6950 GTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATAATACATTCTAGCTTCTTCT 6891 Query 13508 ACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCA 13567 | |||| || |||| || | |||||||| || | || || || |||||||| Sbjct 6890 ATTTGAATCTCCTTTAAAAAATTTACAGCTAAGTTCTCCATTACAATTCCATCACTAGCT 6831 Query 13568 GCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC-GTTTTCTGACAACTTTAACCA 13626 |||||||| || | | | |||||||| | |||||| | || || |||||| ||| Sbjct 6830 GCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTCTGGTTCCTTTAAACTTT-CCCA 6772 Query 13627 ATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTT 13686 |||| | || | |||||||| ||| || | |||||||| || || | | || Sbjct 6771 ATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTCTTT 6712 Query 13687 CTTATACAT 13695 || ||||| Sbjct 6711 TTTGTACAT 6703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430974846764076