Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq1 194 2e-44 seq1058 174 2e-38 >seq1 Length=29879 Score = 194 bits (214), Expect = 2e-44 Identities = 501/734 (68%), Gaps = 41/734 (6%) Strand=Plus/Minus Query 6694 ATAGCTGGATGAGGATTATAATCTAACAATTCAAAATCTTCAAATTTAAAATCACATAAA 6753 |||| ||||||||||| |||| | | | ||| | |||||| || ||||||| | Sbjct 29374 ATAGTTGGATGAGGATAATAACCAATGATTTCTATATCTTCCCATATAAAATCCTCCACT 29315 Query 6754 TTATCAGACttttttttt-AATATTACAACAGGTGAAGGTTTTATTGATCGAGTTAATTG 6812 ||||| ||||| ||| ||| ||| || | ||| | | | || ||| ||| Sbjct 29314 TTATCT-ACTTTACGTTTCAATCTTAATTGTGGAAATGGTCTAGGTAAACGTTTTATTTG 29256 Query 6813 TTCTTTTA-TAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAA 6871 | ||||| | ||| | ||||| | ||||||||||||||| || | ||| |||| Sbjct 29255 CTGTTTTAATTGCTCA-ACATGATTTTCATAAATATGAGCATCACCAATAAAATGTATAA 29197 Query 6872 ATTCACCTGGTTTCATATCAACAGCT-TGAGCAATTAAATATGTTAATAATGCATAAGAA 6930 |||| || |||| |||||| ||| | |||||||| | | |||||||| |||||| Sbjct 29196 ATTCTCCAGGTT-CATATCCACATATATGAGCAATCATAACACATAATAATGAATAAGAT 29138 Query 6931 GCTACATTAAAAGGTACA-CCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGA 6989 || | |||||| || ||| ||||| || | ||| ||||||||| || ||| Sbjct 29137 GCAATATTAAATGG-ACATCCTAAACCTAAATCACAACTTCTTTGATATAATGAGCAACT 29079 Query 6990 TAAAATATTGTC--TAT-AGCATAAAATTGACACAATACATGACATGGAGGTAAAACAGC 7046 ||| |||| | ||| | ||||||||||| | |||| |||||| || ||||| || Sbjct 29078 TAATCTATTATTATTATCAACATAAAATTGAGATAATATATGACAAGGTGGTAAT---GC 29022 Query 7047 CTGATCTAT-AT--CAGATGGATTCCAAGCAGTCATTAAAATACGTCT---ATCATTTGG 7100 | || | | || ||||||||||||| |||| ||| ||| |||| ||||| || Sbjct 29021 CATATATTTCATTGCAGATGGATTCCATGCAGA---TAAGATATGTCTTCTATCATAAGG 28965 Query 7101 ATTTGTTTTTAATTTTGTTATAATTA--TTTG-TAATTGATCTATACCCTGACCTTCATA 7157 |||| || |||| | | | ||||| |||| ||||||||||| || || || | ||| Sbjct 28964 ATTT-TTCTTAAGT--GATTCAATTAAATTTGATAATTGATCTACTCCTTGCCCATTATA 28908 Query 7158 ATTAGTATGACAATTTAT-ATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAG 7216 |||| ||| || | | | ||| | || |||||||||||||||||| ||||| || | Sbjct 28907 ATTATCATG-CATTGTCTTATATTCTGCATTAAAATGTCTCCATTGAAAACCATATATTG 28849 Query 7217 GACCTAAATCACCTTCTTCACGATGATTAAATCCTAATCGATTTAAATTAGATTTTGATC 7276 |||| || ||| ||||| |||| | | || | | ||| |||| |||||||| Sbjct 28848 GACCCAAGTCATTCTCTTCTCGATAACCTAGACCAATTTTATTCAAATACTCTTTTGATC 28789 Query 7277 CATAAGCATCCCAAATATGTACAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTT 7336 ||| | || |||||||| ||| ||| | | |||| | | ||||||| |||| Sbjct 28788 CATTACCAGCCCAAATAAATACTTTTTTATCTAATAAGTGATTACCATTTGTATCACCTT 28729 Query 7337 TAAGGAACCATAAAAGTTCTTC---TACTATTC-CA-CGCCAAAACATTCTTTTTGTAGT 7391 | | ||||| | | ||| || | ||||| || ||| |||| |||| ||||| Sbjct 28728 TTATAAACCACATTAATTCCTCAAAAATTATTCTCATTGCC---ACAT--TTTTAGTAGT 28674 Query 7392 GAATAAAGGGAATG 7405 ||||| || |||| Sbjct 28673 TAATAAGGGAAATG 28660 >seq1058 Length=37125 Score = 174 bits (192), Expect = 2e-38 Identities = 475/720 (66%), Gaps = 27/720 (4%) Strand=Plus/Plus Query 164392 AATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTC 164451 |||| ||||| | || || ||| ||||||| || || ||||||| || ||| || Sbjct 11615 AATTTTAATTTCAATGATATAGGAATAGGTGGTTTAAATGAAGAATTTGCTACTATATTT 11674 Query 164452 AGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAA 164511 ||| |||| |||||| ||| ||||| | || | || ||||||| | Sbjct 11675 AGAAGAGCCTTTGCTAGTAGGGTTATTCCTCCTGTGATTTTGAATGAATTAGGAATACAT 11734 Query 164512 CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGA 164571 ||| |||| || || |||||| |||| ||||| || |||||||||||||| || || Sbjct 11735 CATGTAAAGGGTATGTTATTATATGGTCCTCCAGGAACTGGTAAAACATTAATTGCAAGA 11794 Query 164572 TGCATTGCTCAAGCTTTTAAATC--GCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 || || ||| || ||| | | || || || ||||| ||||| || || ||| Sbjct 11795 CAAATAGCAAAAGTATTGAAAGCAAGAGAACC--AAAGATTGTGAATGGACCAGAGATAT 11852 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 |||| |||||||| || | |||| ||| | |||| | ||| | || ||||| | Sbjct 11853 TGAATAAATATGTTGGGCAAAGTGAAGAAAATATACGAAATCTTTTTTATGAAGCTGAGG 11912 Query 164690 AAGAACA---AAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGA 164746 ||||| | | | |||| || ||| || | | | ||| ||||| |||| ||||| | Sbjct 11913 AAGAATATAGACAAAAAGGAGATTTTTCT-GCACTTCACA--TTATTATTTTAGATGAAA 11969 Query 164747 TAGATGCTCTTTGCAAAAAACGTGGT---GATAATATTAT----TCATGATGCAGTG--- 164796 ||||||| | || |||| |||||| ||||| | | ||| | ||||| Sbjct 11970 TAGATGCAATATGTAAAAGCCGTGGTACAAGTAATAGTGTTGGGTCAGGTGTCAGTGATA 12029 Query 164797 -----GTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCT-TAAATAATATTTTA 164850 |||||||| | | ||| || |||||||| ||| | | |||||||||||| Sbjct 12030 GTATTGTTAATCAACTTTTAAGTAAGATTGATGGTGT-TAATAGTATTAATAATATTTTA 12088 Query 164851 ATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGA 164910 || | |||||||| || | | |||||| || ||||| || |||||| ||||||| || Sbjct 12089 CTTATTGGTATGACAAATAGGCTTGATTTGATAGATGAGGCATTATTAAGACCTGGAAGA 12148 Query 164911 TTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAA 164970 || ||| | | || ||||| |||||||| | ||| || | | | |||| ||| || Sbjct 12149 TTTGAAGTTCATATTGAAATTGGATTACCAAATAAAAGTGGTAGACATGAAATATTAGAA 12208 Query 164971 GTTCATGTGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAA 165030 ||||| | |||||| | | || ||| | | |||||| |||| | Sbjct 12209 ATTCATACGAAGCAAATGAGAGAAAATCATCGTTTAGCAGCTGATGTATGTTTATTAGAG 12268 Query 165031 ATAGCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGAGCCGCT 165090 |||| | ||||||| |||| | ||||| || | || |||||| | ||||| ||| Sbjct 12269 TTAGCAGATAAAACTAAGAATTTTTCAGGTGCAGAGATTGAAGGATTAATTAGAGCTGCT 12328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595861289200800