Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1182 134 2e-27 >seq1182 Length=9582 Score = 134 bits (148), Expect = 2e-27 Identities = 194/271 (72%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| |||||||||| | ||||| ||||| |||||||| || || ||||||||||| Sbjct 2059 GCTAAACGTCATCGCAAAGTCCTTCGTGATAATATCCAAGGTATAACAAAGCCAGCTATT 2000 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||| ||| | ||||| || || ||| | |||| | | |||||||| || Sbjct 1999 CGCCGTTTGGCACGTAGAGGTGGTGTGAAACGTATTTCTGCGCTTATTTATGAAGAAGTT 1940 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| || |||| ||||| | ||||| | ||||| | ||||||||| Sbjct 1939 CGTGGTGTATTAAAGACATTCCTTGAATGTGTTATAAAGGATGCCGTTACTTATACCGAG 1880 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 | |||| ||||||||||| || | |||||| | || |||| | || | | ||| Sbjct 1879 TATGCTAGGCGTAAGACTGTTACAGCTATGGATGTAGTTCATGCTCTAAAGAGAC-AGGG 1821 Query 16673 CGTAAGATT-TATGGTTTTGGAAGTTAATCT 16702 || ||| ||||||||||| ||||| || Sbjct 1820 TAAAACATTATATGGTTTTGGTGGTTAAACT 1790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073885226534