Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq196 163 3e-35 >seq196 Length=8782 Score = 163 bits (180), Expect = 3e-35 Identities = 578/895 (65%), Gaps = 23/895 (3%) Strand=Plus/Minus Query 21112 TATAAAAATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGA 21171 ||| ||| | ||| |||||| |||||||||| ||||| | |||| | | | Sbjct 7608 TATGAAACTGGTTAGTTAAAATTCAGCATCTAGATTGAAAATTTGGTCTTTCTGATGAGC 7549 Query 21172 CATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTC 21231 ||||| ||| |||| || ||| |||| ||| || ||||| || || || |||| Sbjct 7548 CATAACTCCTGCCATTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTG 7489 Query 21232 CAATGATATAGATTCCATAAAATCAAATGGATTT-TCAGATTTAAATATTTTATTACAAC 21290 ||||| ||| ||||| ||||||||||||| | | ||| | | ||| ||| | Sbjct 7488 TAATGAAATAAGATCCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATC 7429 Query 21291 CCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAAT 21350 ||| | | | ||| | ||| || |||||||| |||||||| ||||||| | ||| Sbjct 7428 T-AGTGCAAACAGTAAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAAT 7370 Query 21351 TCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGG 21410 |||| || || | | |||||| | | | ||||| | ||| | || | Sbjct 7369 TCATCCCAATGAGATCTACAGGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAG 7310 Query 21411 CTTCAACAATTATATTTATTATCCT---AGATGTACTAGGGGGATACAATAATTGTTTAA 21467 |||| | || || | | | || | ||| | | | || |||| |||| Sbjct 7309 CTTCTGCTATAATTTCTTGAACTCTTTCACATGGAAGACGATTATT---TAATGTTTTAT 7253 Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 | | |||||| |||| || ||| | ||||||||| ||| ||||| ||||||||||| Sbjct 7252 AAAGTAAACATCCAAAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAA 7193 Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCT 21586 ||||||| || ||||||||||| | || || | ||||||||| | | |||| ||| || Sbjct 7192 ATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAG-CACAAAAGCTGCCA 7134 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATG-TAGATTC 21645 ||||| || || || ||||| ||| ||| ||| || || ||| | ||| |||| Sbjct 7133 GAAAACAAGATACCTTCAACTGCACAAAAGCCAATTACTCTTTCTGCAAATGACCGATTA 7074 Query 21646 TTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAA-TACAATCAATTGT-A 21703 || || ||||| ||| |||||||| |||||| ||||| | | || ||| | Sbjct 7073 TTATTC----ATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGTGA 7018 Query 21704 TCAATAGCTTTTAAAAGATGAttt--ttttCATCTACATCGGTTATGNNNNNNNNNNNNN 21761 | || |||| ||||| |||| || | |||||| | ||| Sbjct 7017 T--ATTGCTTCAAAAAG--CATTTGGCGATCTTTTACATCTGATATATATTGATCAATTA 6962 Query 21762 NNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATC 21821 ||| ||||| || || | || || || || |||||||| ||| | || Sbjct 6961 AAAGGGAATAAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATAATACATTC 6902 Query 21822 TTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTC 21881 | || ||| ||||| ||| |||| | ||| ||||| || |||| |||| Sbjct 6901 TAGCTTCTTCTATTTGAATCTCCTTTAAAAAATTTACAGCTAAGTTCTCCATTACAATTC 6842 Query 21882 CATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTA 21941 ||||||| || ||||||||||| || | || ||| ||||||| | ||| || ||| Sbjct 6841 CATCACTAGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTCTGGTTCCTTTA 6782 Query 21942 ATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 | ||| ||||||| | || | |||||||| ||||| | |||||||| Sbjct 6781 AACTTTCCCAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAA 6727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531891239083120