Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1249 325 5e-84 seq196 232 8e-56 >seq1249 Length=14599 Score = 325 bits (360), Expect = 5e-84 Identities = 1216/1888 (64%), Gaps = 34/1888 (2%) Strand=Plus/Plus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 |||||||| || ||| | ||| || || | || ||||| || ||||||| | Sbjct 11481 GTGAATTGTATAGGATTTGCAGCGCTTTGTGTTCTTAAGTAGTAAGCACCAGTTTTTAAA 11540 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || ||||||| || || |||||| | ||| || | ||| | | || ||| ||| Sbjct 11541 CCCTTCTTCCATCCATAGAAGTGCATAGAAGATAGCTTTGCATAGTTGGCATTTGCAATA 11600 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 | ||||| | ||| ||| |||| ||| | | ||| || ||||| ||||| | || Sbjct 11601 TAAATATTTAGAGACTGAGATTGACAAATGTATGGTCCTCTATCTGCCGCCATATCAATA 11660 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG 62233 | | |||||| ||||||||| | ||||| || | |||| ||||||| || | Sbjct 11661 ACTGCTTTTTGTCTAATTTCCCAGACGGTTTTGTACAGGTCGCG-AATATCTCGCGGTAT 11719 Query 62234 G---TTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA-TCTCATCAT 62289 | |||| |||| |||| | || || || || | || | |||| |||| Sbjct 11720 AGACTCAATATTTTGAACACTTCCATTGTTAGCAATGATACTCTGTTTCAGTCTC-TCAT 11778 Query 62290 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 62349 ||||| | || |||| | | | | ||| ||||| || || || || | Sbjct 11779 CCCATAGTCCCAATTCAAGTAAATCATTCAACAAATGAGGATTCACAACAAAGAACTCCC 11838 Query 62350 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTC 62409 |||||||||| | || | || ||||| |||| | ||||| | |||||||| | Sbjct 11839 CAGACAATACACGCCTATGATATATATTTGAGGTAAATGGTTCAAAGCTTTCATTATTCC 11898 Query 62410 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62469 | | | |||| || ||||| || ||||| || || ||||| || |||||||| | Sbjct 11899 CTAGTAACTGAGATGTAGATGCGGTAGGCATTGGAGCTACCAACAACGAGTTTCTAAGGC 11958 Query 62470 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC----GACGGTACA 62525 | || | ||||| || || || ||||| |||||||| ||| || ||| Sbjct 11959 CATACTTAGCTATTTTCTCCTTCAGTAAATCCCAGTTCCAAAG-TCCTGAGGAGGGTTGC 12017 Query 62526 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCG 62585 || |||||| | ||| |||| || || ||| | |||| || Sbjct 12018 ACATTCCAGAGATCAAATTGTAGCAGACCTCTACTAGCTGGTGAACCTTGAAATGTTTCA 12077 Query 62586 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62645 || || || | |||||| ||||| |||||||| || || | ||| | || || || || Sbjct 12078 TAGGGACCATACTTCTCTGCTAGCTCACAACTTGCATCAAGAGCAGCATAGTATATTGTC 12137 Query 62646 TCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 62704 || || |||| |||||| | | || || || ||| ||||||| | || | Sbjct 12138 TCAAATATCTCAACATTTAGTTTCCTG-GCATCTTTAGATTCATATGGATATCTCAATAT 12196 Query 62705 AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62764 ||||| || || | ||||| || || | ||| | || ||||||||| |||||| Sbjct 12197 CATAAAACAATCTGCAAGACCTTGTACTCCTAAACCAAGTGGCCTATGTCTCAGATTAGA 12256 Query 62765 GATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 62823 | | || ||||||||||||||||| | ||| |||| || ||| ||||| || Sbjct 12257 CCTC-CTGCACTCTGGAATAGGATAATATCCACGATCAATAACTTCATTTAGATTCCTTG 12315 Query 62824 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT-----CTATTAC 62878 ||| || || || || | || || |||||| ||| | || |||| | Sbjct 12316 TTGCTACCTTTACTACTTCATATAGCTTTTTAAAATCGAATTTCTTATTATCCCTATCAA 12375 Query 62879 AAACATGTTCAAGGCA-ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 62937 || | | || | | |||||||| |||||||| || ||||| || | | | || Sbjct 12376 CAAAACGAGGGAGCCCTATAGATGCCAAGTTACAAACTGCGACCTCGTTTGAACTAGTAT 12435 Query 62938 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTAC 62997 | | || || || || || ||||| ||| | || || || || | |||||||||||| | Sbjct 12436 ACTCCATAATTTCTGTACATAGATTGCTAGATTTTATCGTACCCAGATTTTGTTGATTGC 12495 Query 62998 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 63057 | || ||| ||||||||||| ||| ||||||||||| || ||||| || || | Sbjct 12496 TTTTACGATTAGCTGCATCCTTATAGCAAATAAATGGAGTACCTGTCTCAATTTGTGACT 12555 Query 63058 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTC--CTTTCTCT 63115 || | || ||| | | | || || ||| | || || | | | |||| | Sbjct 12556 GTAGCAATGCAAACCACAAACTTTGTGCTTTAATTGT--TTTCCTACCGCGACCTTCTTT 12613 Query 63116 TTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 63173 ||| ||||||| ||| ||| || || | ||| ||||| |||| | || ||||| Sbjct 12614 TTC--ATAGTGTTCATATAATTCTTTAAATTGGTCACCCCAGACATCTTGCATCCCAGGG 12671 Query 63174 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63233 |||||||| |||||||| || | ||| | | | || | || |||| | ||| || ||| Sbjct 12672 CATTCATCAGGACACATTAATGTCCAGTTTGCATCCTTCTCTACTCTCTCCATGAACAGA 12731 Query 63234 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63293 ||||| ||||| || ||| ||||| ||| | | ||| ||||| || || ||| Sbjct 12732 TCAGGTATCCATAGTGCTGGAAATATATCACGGCATCTCATCTCCTCTTTACCATGGTTC 12791 Query 63294 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63353 || | | || | || ||| || ||| | |||||| |||||||| || | || | Sbjct 12792 TTCCTTATCTCTATAAATTCCAAAACATCCGCATGCCAAGGTTCCAAATAGACAGCAAGT 12851 Query 63354 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63413 | || || ||| ||| || || || | || | || || | |||||| || | | Sbjct 12852 GCACCCTTCCTTTTTCCTCCACCTTGGTCAACATAACGTGCTGTATCATTATACACACGC 12911 Query 63414 AACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCA 63473 | ||||||||| | ||| || || ||||||| ||||| ||| || ||| || Sbjct 12912 AGCATTGGAATTAAACCATTAGACCTACCATTAGTACCACGGATGTATGATCCTGCAGCT 12971 Query 63474 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63533 || |||||| || | | |||| ||| || || | || || ||| ||| Sbjct 12972 CGTATATTAGAAACAGCCACCCCTAATCCACCAGCAGTCTTGCTTATATTTGCACATTTC 13031 Query 63534 TTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 |||| || ||| | || || || || ||||| ||| || || | |||||| Sbjct 13032 TTTAGTGTATCAAAAATGCCATCAATTGAGTCATCTGACATTTTGAGAATAAAACAAGAG 13091 Query 63594 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 63653 ||||| || | ||| ||| || ||||| ||||| || |||| ||| || ||||| | Sbjct 13092 GACATCTGTGGGCGAAGAGTACCAGCATTGAATAATGTCGGAGTAGCATGAGTAAAATAC 13151 Query 63654 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA-TCCCATTGATGAATTCC 63712 || | ||| || || | || || ||||| |||| |||||| | |||| | || || || Sbjct 13152 TTCTGAGAGAGCAGTTCATAAGTTTCAATTGCTGCATCTATATTACCATAG-TGGATACC 13210 Query 63713 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 63772 | ||| | |||||| | ||| || || ||||| || ||||| | | | || Sbjct 13211 ACAGGAGACTCTCATTAATAGGTGTTGTGGCCTTTCCACAATCTTATCATCGACCCGCAG 13270 Query 63773 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63832 || || ||| |||| | ||| |||||| ||||||||| ||| ||| || || | | Sbjct 13271 TAAATAAGATCTTTCTAGAGTCTTAAAAGCAAAATAGTCATATTCAAAATCACG-GCTAA 13329 Query 63833 AAT-AATAACCGAGTTGAGTTTATCCTT 63859 ||| |||||| ||||| | | |||| || Sbjct 13330 AATCAATAACTGAGTTTAATCTATCTTT 13357 >seq196 Length=8782 Score = 232 bits (256), Expect = 8e-56 Identities = 613/909 (67%), Gaps = 39/909 (4%) Strand=Plus/Minus Query 32958 TTAAAAGTCAACATCTAAA--GAAAAATGATTATCTTCT--TGAGACATAACTCCCATTT 33013 |||||| ||| |||||| | ||||| | | | |||| |||| ||||||||| Sbjct 7593 TTAAAATTCAGCATCTAGATTGAAAATTTGGTCT-TTCTGATGAGCCATAACTCCTGCCA 7535 Query 33014 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33073 ||||||||||| | || ||||| || ||||| |||||||| |||| ||||| ||| | Sbjct 7534 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 7475 Query 33074 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 33133 |||| ||||||| ||||| || ||||| || | ||| || | | | || | | | Sbjct 7474 CCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGCAAACAGTA 7415 Query 33134 ATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 33193 | | ||| || || ||||| |||||| ||| | | | ||||||| || || || | Sbjct 7414 AACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAGAT 7355 Query 33194 TAACTGGAA--GAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 33251 || || | || | || ||| |||| |||||| || || |||| |||||| Sbjct 7354 CTACAGGTAATGAATCACA-TAA-AAATGTACGTTCAACTTCAACAGCTTCTGCTATAAT 7297 Query 33252 AGATCTAACGGTTTCTTCACTCGGTGGATGC--AATAAATGTTTAA-ACATCAAACATGC 33308 | ||| |||| || || || | | | ||||||| | | | |||||| | Sbjct 7296 TTCTTGAACTCTTTC---ACATGGAAGACGATTATTTAATGTTTTATAAAGTAAACATCC 7240 Query 33309 GAAATC-GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 33367 || || ||| || | ||| || |||||| |||||||| || ||||| || | ||| | Sbjct 7239 AAAGTCCGCA-TGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCAG 7181 Query 33368 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCAGAAAAGAAGATT 33426 |||||| ||||| || |||||||||||||| | | | || | | |||||||| ||||| Sbjct 7180 GCATTAATCCACGTTTCTTAAGCCAAAATATAGCA-CAAAAGCTGCCAGAAAACAAGATA 7122 Query 33427 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAACCGGCGCTGTCATGTATCC 33484 ||||| |||||| |||| |||| | ||| ||| | || |||| | | || |||| Sbjct 7121 CCTTCAACTGCACAAAAGCCAATTACTCTTTCTGCAAATGACCG--ATTATTATTCATCC 7064 Query 33485 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 33544 ||||| ||||| || ||||| |||| || || | | ||| || | ||| | Sbjct 7063 ACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGTGATATTGCTTCAAAAA 7004 Query 33545 G---ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 33601 | | | | || |||| |||| | ||| ||| || ||||| ||| ||| Sbjct 7003 GCATTTGGCGATCTT--TTAC-ATCTGATATATATTGATCAATTAAAAGGGAATAAGTTT 6947 Query 33602 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA-TCTAGCCTCGGTAATC 33660 | ||||| | || || || || |||||||| || | ||| |||||| || || Sbjct 6946 CACTGTGAATCTGCTCCATAGCAATTTGAAATCCATA-ATACATTCTAGCTTCTTCTATT 6888 Query 33661 TGTA-CTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719 || | || || || ||||| | | || || || || | || ||||| ||||| ||||| Sbjct 6887 TGAATCTCCTTTAAAAAAT-TTACAGCTAAGTTCTCCATTACAATTCCATCACTAGCTGC 6829 Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT---GTTAGTTTATTCCA 33776 |||||| || || |||| ||| ||||||| |||| |||||| ||| | | ||| Sbjct 6828 AAAAAATGCTAAGACATATTTAATAAAATGTTTT---TCTGGTTCCTTTAAACTTTCCCA 6772 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 ||| | || || | | || ||||| ||||| | ||||||||||| || ||| | || Sbjct 6771 ATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTCTTT 6712 Query 33837 TTTATACAT 33845 ||| ||||| Sbjct 6711 TTTGTACAT 6703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622936002524080