Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1249 105 6e-18 >seq1249 Length=14599 Score = 105 bits (116), Expect = 6e-18 Identities = 187/271 (69%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 147117 GTGAATTGAATCGTGTTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTTTAAA 147176 |||||||| || | ||||| ||| || ||||| || ||||| || ||||||||| Sbjct 11481 GTGAATTGTATAGGATTTGCAGCGCTTTGTGTTCTTAAGTAGTAAGCACCAGTTTTTAAA 11540 Query 147177 CCCTTTTCCCAAGAATAGTCGTGAATGGATGATAAAACTTT--ATAGGTTGGATTGGCCA 147234 ||||| | ||| |||| ||| || || ||| | |||| |||| | | ||| || | Sbjct 11541 CCCTTCTTCCATCCATAGAAGTGCATAGAAGAT--AGCTTTGCATAGTTGGCATTTGCAA 11598 Query 147235 CAAAAAGATTGAGCGATTGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGCCATGTCCA 147294 | ||| ||| || || || ||| ||||| ||||| | ||||| ||||| || | Sbjct 11599 TATAAATATTTAGAGACTGAGATTGACAAATGTATGGTCCTCTATCTGCCGCCATATCAA 11658 Query 147295 ACACTACTTTTTGTTTAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGATATTGTGTGGAA 147354 ||| |||||||| |||||||||| |||| ||| | || | |||| | || | Sbjct 11659 TAACTGCTTTTTGTCTAATTTCCCAGACGGTTTTGTACAGGTCGCGAATATCTCGCGGTA 11718 Query 147355 TTTCATCAATATTTTGTACAGATCCGTTGTT 147385 | ||||||||||| ||| ||| ||||| Sbjct 11719 TAGACTCAATATTTTGAACACTTCCATTGTT 11749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478653796043360