Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq196 280 4e-70 seq1249 190 5e-43 seq1246 87.8 5e-12 >seq196 Length=8782 Score = 280 bits (310), Expect = 4e-70 Identities = 379/523 (72%), Gaps = 5/523 (1%) Strand=Plus/Plus Query 22430 CAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGG 22489 || |||| | ||||||||| ||||| || |||||||| ||| | || ||||| || | Sbjct 7031 CAGTTAAAACTAAGGCAGAATGGGCAACAAAGTGGATGAATAATAATCGGTCATTTGCAG 7090 Query 22490 AACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCATTTTGTGCA 22548 || | | |||| ||| || |||||||| || || |||||||| ||| |||||||| Sbjct 7091 AAAGAGTAATTGGCTTTTGTGCAGTTGAAGGTATCTTGTTTTCTGGCAGC-TTTTGTGCT 7149 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || |||||||| || ||||||| | | ||||| || |||| ||||| ||||| |||| Sbjct 7150 ATATTTTGGCTTAAGAAACGTGGATTAATGCCTGGATTAACATTTTCTAATGAACTAATA 7209 Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATT 22668 ||||||| ||| ||||| | || |||| ||| | || ||| || ||| | | | Sbjct 7210 TCTAGAGATGAAGGTATTCATGCGGACTTTGGATGTTTACTTTATA--AAACAT-TAAAT 7266 Query 22669 CATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGT 22728 || ||||||| ||||| || | || ||||| || | || |||||| |||||||| Sbjct 7267 AATCGTCTTCCATGTGAAAGAGTTCAAGAAATTATAGCAGAAGCTGTTGAAGTTGAACGT 7326 Query 22729 CTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGT 22788 |||| | || || | ||||| ||| ||||||||| || ||| | || |||| Sbjct 7327 ACATTTTTATGTGATTCATTACCTGTAGATCTCATTGGGATGAATTCTAGATTAATGGCC 7386 Query 22789 ACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTAT 22848 ||||||| |||||||||| |||||| || | || |||| | | | ||||| || Sbjct 7387 CAATATATTGAATTTGTTGCTGATCGTTTACTGTTTGCACTAGATGTTCCAAAGTTATAC 7446 Query 22849 AACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTC 22908 || ||| ||||||||||| |||||||| ||||||||| | |||| || || || || Sbjct 7447 AATGTCACGAATCCATTTGATTGGATGGATCTTATTTCATTACAAGGTAAAACTAACTTT 7506 Query 22909 TTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGG 22951 || || ||| |||| | ||||||||||| ||||| ||||||| Sbjct 7507 TTTGAGAAACGAGTAGCTGAATACCAAATGGCAGGAGTTATGG 7549 >seq1249 Length=14599 Score = 190 bits (210), Expect = 5e-43 Identities = 615/943 (65%), Gaps = 10/943 (1%) Strand=Plus/Minus Query 363373 GATCTCGAGTATGA-TATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTAT 363431 ||| | || ||||| |||||| | | |||||| | || | ||| || || || | Sbjct 13321 GATTTTGAATATGACTATTTT-GCTTTTAAGACTCTAGAAAGATCTTATTTACTGCGGGT 13263 Query 363432 CAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCA 363491 | ||| | | ||||| ||| | || || || | |||||| | || | ||||||||| Sbjct 13262 CGATGATAAGATTGTGGAAAGGCCACAACACCTATTAATGAGAGTCTCCTGTGGTATCCA 13203 Query 363492 TTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC-A 363550 | || | ||||| || |||||||| ||| | || || | | ||||| | Sbjct 13202 CTATGGTAATATAGATGCAGCAATTGAAACTTATGAACTGCTCTCT-CAGAAGTATTTTA 13144 Query 363551 CGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCT 363610 | || || || || ||| | | ||||||||| |||| | ||||||||||| ||||| | Sbjct 13143 CTCATGCTACTCCGACATTATTCAATGCTGGTACTCTTCGCCCACAGATGTCCTCTTGTT 13084 Query 363611 TTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTG 363670 || |||| |||||| || || || || || || || ||||| ||||| ||||| |||| Sbjct 13083 TTATTCTCAAAATGTCAGATGACTCAATTGATGGCATTTTTGATACACTAAAGAAATGTG 13024 Query 363671 CTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAG 363729 | ||| ||||| ||| || ||| | || || | | ||| | || || ||| Sbjct 13023 CAAATATAAGCAAGACTGCTGGTGGATTAGGGGTGGCTGTTTCTAATATACGAGCTGCAG 12964 Query 363730 AA-CAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGT 363788 | || ||||| || || || || || ||||| | |||| ||||| ||||| Sbjct 12963 GATCA--TACATCCGTGGTACTAATGGTAGGTCTAATGGTTTAATTCCAATGCTGCGTGT 12906 Query 363789 GTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGC 363848 || | | |||| || | || || ||||| ||||||||||| | || || || |||| Sbjct 12905 GTATAATGATACAGCACGTTATGTTGACCAAGGTGGAGGAAAAAGGAAGGGTGCACTTGC 12846 Query 363849 TATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACAC 363908 | | ||| | || ||| ||||| ||| |||| || ||| | ||| | |||| ||| Sbjct 12845 TGTCTATTTGGAACCTTGGCATGCGGATGTTTTGGAATTTATAGAGATAAGGAAGAACCA 12786 Query 363909 GGGAAAAGAGGAATTGCG-TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATT 363967 || |||||||| || | ||| |||||| | || ||||| ||| | |||| | | Sbjct 12785 TGGTAAAGAGGAGATGAGATGC-CGTGATATATTTCCAGCACTATGGATACCTGATCTGT 12727 Query 363968 TTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAG 364027 | ||| || | || ||| | | || ||| || | | || || | ||||| || | Sbjct 12726 TCATGGAGAGAGTAGAGAAGGATGCAAACTGGACATTAATGTGTCCTGATGAATGCCCTG 12667 Query 364028 GTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGG 364087 | | ||||| ||||||||| | | | | |||| ||| | |||||| || | Sbjct 12666 GGATGCAAGATGTCTGGGGTGACCAATTTAAAGAATTATATGAACACTATGAAAAAGAAG 12607 Query 364088 GAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGA 364147 | | | | || |||||| ||||| | | |||||||| | | | || || | Sbjct 12606 GTCGCGGTAGGAAAACAATTAAAGCACAAAGTTTGTGGTTTGCATTGCTACAGTCACAAA 12547 Query 364148 TTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGC 364207 |||||||||| || || | ||| | || || ||| | || || || ||| || | Sbjct 12546 TTGAGACAGGTACTCCATTTATTTGCTATAAGGATGCAGCTAATCGTAAAAGCAATCAAC 12487 Query 364208 AGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTC 364267 | | || ||||| || | ||||| |||||||| || ||||| || || || | Sbjct 12486 AAAATCTGGGTACGATAAAATCTAGCAATCTATGTACAGAAATTATGGAGTATACTAGTT 12427 Query 364268 CCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCC 364310 | ||||| || || |||||| | || || || | ||| || Sbjct 12426 CAAACGAGGTCGCAGTTTGTAACTTGGCATCTATAGGGCTCCC 12384 >seq1246 Length=36248 Score = 87.8 bits (96), Expect = 5e-12 Identities = 174/258 (67%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 145532 TAAATCTTCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAACACTTCTTCGTC 145591 |||| ||| ||||||||||| ||||| ||||| |||| | | | | ||| | Sbjct 22633 TAAAATTTCCTCTGAAAATCCTGTTCCTATCTTACATATTGTCTCATAAATTTCACTATT 22574 Query 145592 TGGATCATACACCGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCGCGACCGGT 145651 ||||| ||| || || | || ||| ||||||| |||| | ||| || ||| Sbjct 22573 TGGATTATAAACTGCCAATAGAAATGTTCCATATATACCACACCTTTTACCTTTACCATG 22514 Query 145652 ATACCCCGCAATTGGTACAAGATCACAACTATCACCCATTCCGGCAAGATAATCCTTTTT 145711 | | | || || || |||| |||| |||||| || || ||| |||||| || || Sbjct 22513 AAATGCAGCTATAGGGACAACATCAATACTATCCATAATACCATCAATATAATCTTTCTT 22454 Query 145712 AAGTTTTAGCCAATTGAGAGAACGTTTCGATGGTTCATAGCTAGAGTTATCGTCCAATGA 145771 | ||| |||||||| | |||||||| || |||||||| || | || || | || | Sbjct 22453 TATTTTAAGCCAATTTAAGGAACGTTTAGAAGGTTCATAACTTGCATTTTCATTTAAAGT 22394 Query 145772 TTTTACCATTAGCCCCTC 145789 || ||||||| ||||| Sbjct 22393 CTTAACCATTAATCCCTC 22376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303329586524516