Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq581 141 6e-29 seq1197 140 2e-28 seq431 123 2e-23 >seq581 Length=7318 Score = 141 bits (156), Expect = 6e-29 Identities = 169/228 (74%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||||||||| ||||| || || |||||||| || | ||||| |||||||| |||||||| Sbjct 1174 ACCACCTCTTAAACGTAAAACTAAATGAAGGTTGAT-TCCTTCTGAATATTATAATCAGA 1232 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| || | || || | |||||| || ||||| |||| | ||||||||| | || Sbjct 1233 TAAAGTCCGACCATCCTCAAGTTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGTGG 1292 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | |||||||| || |||||| ||| ||||| | | |||||| |||||| Sbjct 1293 AATCCCTTCTTTATCTTGAATTTTAGCCTTTACATTTTCAATAGTATCAGATGGTTCAAC 1352 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| | ||| || ||||||||||| || || ||||| || |||||||| Sbjct 1353 TTCAAGTGTTATTGTTTTACCCGTTAAAGTCTTCACAAAAATCTGCAT 1400 >seq1197 Length=14044 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 10887 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 10946 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 10947 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 10981 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| ||||||||||||||||||||| |||||||| || | Sbjct 12952 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTTACTATCGGTTTCCC 13011 Query 20007 GGTAATATTTAGCCTT 20022 |||||||||| || Sbjct 13012 ACCAATATTTAGCTTT 13027 >seq431 Length=1763 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || | ||| || ||||| | ||| |||||| ||||||||||| || || Sbjct 110 ACCACCACGTAACCTCAAAACTAAATGTAAAGTAGACTCCTTCTGAATATTGTAGTCTGA 169 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| | | || || | ||| ||||| ||||| |||| ||||||||||| | || Sbjct 170 TAAAGTTCTGCCATCTTCAAGTTGCTTTCCAGCAAAGATTAAACGTTGTTGATCTGGAGG 229 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | || || ||||| || ||| ||| ||||| | | ||||| | |||||| Sbjct 230 TATTCCCTCCTTGTCTTGTATCTTTGCCTTTACATTTTCAATTGTATCAGAAGGTTCAAC 289 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||||||||||||| || || |||||||| || || || ||||| Sbjct 290 TTCTAATGTAATAGTTTTCCCAGTTAAGGTTTTAACAAAAATTTGCAT 337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334941329840978