Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq581 140 3e-28 seq431 89.7 4e-13 >seq581 Length=7318 Score = 140 bits (154), Expect = 3e-28 Identities = 170/228 (75%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||||| || |||||| | || ||| | ||||| || | ||| Sbjct 1400 ATGCAGATTTTTGTGAAGACTTTAACGGGTAAAACAATAACACTTGAAGTTGAACCATCT 1341 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || | ||| | |||| ||| || |||||||||||||||||||| || Sbjct 1340 GATACTATTGAAAATGTAAAGGCTAAAATTCAA-GATAAAGAAGGGATTCCACCTGATCA 1282 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | |||||||| || |||||| | || |||| ||| ||| | ||||| || Sbjct 1281 ACAAAGATTAATTTTTGCTGGGAAACAACTTGAGGATGGTCGGACTTTATCTGATTATAA 1222 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || ||||| || || |||||||| || | ||||||| || Sbjct 1221 TATTCAGAAGGAATCAAC-CTTCATTTAGTTTTACGTTTAAGAGGTGG 1175 >seq431 Length=1763 Score = 89.7 bits (98), Expect = 4e-13 Identities = 168/246 (68%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 24980 ATTTGTACAAAACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCAC 25039 ||||||| | || || ||||||||| ||||| || || || || || ||| | || || Sbjct 354 ATTTGTA--AGACTTAAGAATGCAAATTTTTGTTAAAACCTTAACTGGGAAAACTATTAC 297 Query 25040 AGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGA 25099 | | ||||| || | ||||| || || || | ||| ||| || ||||| || Sbjct 296 ATTAGAAGTTGAACCTTCTGATACAATTGAAAATGTAAAGGCAAAGATACAAGACAAGGA 237 Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 || || || || || ||||| || | || ||||| || || ||| | ||||||| | Sbjct 236 GGGAATACCTCCAGATCAACAACGTTTAATCTTTGCTGGAAAGCAACTTGAAGATGGCAG 177 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAG 25219 ||| | || ||||||||||| || || || || |||||||||| | ||| || | Sbjct 176 AACTTTATCAGACTACAATATTCAGAAGGAGTCTACTTTACATTTAGTTTTGAGGTTACG 117 Query 25220 AGGAGG 25225 || || Sbjct 116 TGGTGG 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433320405655970