Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq196 167 3e-36 >seq196 Length=8782 Score = 167 bits (184), Expect = 3e-36 Identities = 563/850 (66%), Gaps = 35/850 (4%) Strand=Plus/Minus Query 92804 TTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAAT 92863 |||||||||| | ||| ||| ||||| || || || || |||| || || || || Sbjct 7534 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 7475 Query 92864 TCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACT-CGTACAAT 92920 || | | | ||||||| || | || || ||||| | | ||| | | | ||| | Sbjct 7474 CCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAAC-ATCTAGTGCAAACAGT 7416 Query 92921 AATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGA 92980 || | |||||| |||||||| || || || | ||| || | ||||||| || | ||| Sbjct 7415 AAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAGA 7356 Query 92981 CGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCT-CGATTACAACGGCTTCTTTCAAGAT 93039 |||||||| | || || |||| | | | | | |||| |||||| | || Sbjct 7355 TCTACAGGTAATGAATCACATAA-AAATGTACGTTCAACTTCAACAGCTTCTGCTATAAT 7297 Query 93040 TTCTATTACTCTACTATTTGGTGGT---TTTTGTACGACATAATTGTACATTAAGCACGC 93096 |||| ||||| | ||| | || | || | | || || | ||| || | Sbjct 7296 TTCTTGAACTCTTTCACATGGAAGACGATTATTTA--ATGTT-TTATAAAGTAAACATCC 7240 Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGG 93156 |||||| | ||| | |||||| |||| ||||| | ||||| |||||||| || || Sbjct 7239 AAAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCAGG 7180 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | | ||| |||||||| ||||||||||| | | ||| || |||||||| || ||||| Sbjct 7179 CATTAATCCACGTTTCTTAAGCCAAAATATAGCACAAAAGCTGCCAGAAAACAAGATACC 7120 Query 93217 TTCCACGGCTGCAAATGCCACAATACG--TTCGGCAAAATTTGCGGAATTACTGCTGATC 93274 ||| || || |||| |||| | ||| ||| ||||| || |||| | | ||| Sbjct 7119 TTCAACTGCA-CAAAAGCCA-ATTACTCTTTCTGCAAA---TGACCGATTATTATTCATC 7065 Query 93275 CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAG-TGTTTCGATA--GCGTTA 93331 || ||| ||||| || || || | |||| |||| ||| |||| || | | Sbjct 7064 CACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGT---GATATTGCTTCA 7008 Query 93332 AATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATT 93391 || || | || || | |||| ||| ||| ||| ||||| || ||||| || Sbjct 7007 AAAAGCATTTGGCGATCTTTTACATCTGATATATATTGATCAATTAAAAGGGAATAAGTT 6948 Query 93392 TCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACAT-CTAGCTTCCGTGAT 93450 ||| || | | |||||| |||||||| ||||| || | |||| |||||||| || Sbjct 6947 TCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATA-ATACATTCTAGCTTCTTCTAT 6889 Query 93451 CTGCA-CTTCTTGAGAAAATCTCT--CTACGAGATTTTCATTGACTATACCATCGGATGC 93507 || | || ||| | ||||| | ||| || | | |||| || || ||||| || Sbjct 6888 TTGAATCTCCTTTAAAAAATTTACAGCTA--AGTTCTCCATT-ACAATTCCATCACTAGC 6832 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC-TTTAAGCTTATCCC 93566 ||||||||| || || | || || ||||||||||| || || ||||| ||| |||| Sbjct 6831 TGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTCTGGTTCCTTTAAACTT-TCCC 6773 Query 93567 AATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTT 93626 |||| | || | | ||| | ||||| |||||||||| || |||||| ||| Sbjct 6772 AATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTCTT 6713 Query 93627 TTTTGTACAT 93636 |||||||||| Sbjct 6712 TTTTGTACAT 6703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556850790427120