Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1249 84.2 3e-11 >seq1249 Length=14599 Score = 84.2 bits (92), Expect = 3e-11 Identities = 345/536 (64%), Gaps = 6/536 (1%) Strand=Plus/Plus Query 116064 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 116123 ||| | |||||| || || | |||| ||||| || || | |||||| ||||| || Sbjct 12023 CCAGAGATCAAATTGTAGCAGACCTCTACTAGCTGGTGAACCTTGAAATGTTTCATAGGG 12082 Query 116124 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAA 116183 || | ||| || | || | || || || || || || | || ||||||||||| Sbjct 12083 ACCATACTTCTCTGCTAGCTCACAACTTGCATCAAGAGCAGCATAGTATATTGTCTCAAA 12142 Query 116184 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGA-CGGCACAAAATAA 116242 || | |||| | | | |||| || | || ||| | | || | | | | |||| Sbjct 12143 TATCTCAACATTTAGTTTCCTGGCATCTTTAGATTCATATG-GATATCTCAATATCATAA 12201 Query 116243 ATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTC 116302 | ||| || |||||||| || || | |||| ||| | |||||||| ||||||| || Sbjct 12202 AACAATCTGCAAGACCTTGTACTCCTAAACCAAGTGGCCTATGTCTCAGATTAGAC-CTC 12260 Query 116303 GAGCGGTCT-CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACA 116361 || ||| | |||||| | | ||| ||||| ||||||||| | || | Sbjct 12261 CTGCACTCTGGAATAGGATAATATCCACGATCAATAACTTCATTTAGATTCCTTGTTGCT 12320 Query 116362 ACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATAC 116421 |||||| | ||||| ||||||| |||| || | | | || || ||| | Sbjct 12321 ACCTTTACTACTTCATATAGCTTTTTAAAATCGAATTTCTTATTATCCCTATCAACAAAA 12380 Query 116422 TTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCT 116481 ||| || | || || |||| ||||| || | | ||| | | ||| ||||| Sbjct 12381 CGAGGGAGCCCTATAGATGCCAAGTTACAAACTGCGACCTCGTTTGAACTAGTATACTCC 12440 Query 116482 ATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTT 116541 |||||||| ||||| | ||| | || || || |||| || | |||| ||| ||| Sbjct 12441 ATAATTTCTGTACATAGATTGCTAGATTTTATCGTACCCAGATTTTGTTGA-TTGCTTTT 12499 Query 116542 GTG-TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACT 116596 | ||| |||||||| ||| ||| |||| || || ||||| |||| |||| Sbjct 12500 ACGATTAGCTGCATCCTTATAGCAAATAAATGGAGTACCTGTCTCAATTTGTGACT 12555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613496172208080