Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1249 201 1e-46 >seq1249 Length=14599 Score = 201 bits (222), Expect = 1e-46 Identities = 916/1431 (64%), Gaps = 26/1431 (2%) Strand=Plus/Minus Query 111903 GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962 ||||| |||||| || ||||| | ||||||||||| || || | ||| | ||||| Sbjct 12949 GGTACTAATGGTAGGTCTAATGGTTTAATTCCAATGCTGCGTGTGTATAATGATACAGCA 12890 Query 111963 CGCTATGTAAACCAAGCTGGGCGTC---GCAAGGGATCTATCGCAGTCTATCTTGAGCCA 112019 || ||||| |||||| ||| | | ||||| | | || |||||| | || || Sbjct 12889 CGTTATGTTGACCAAGGTGGAGGAAAAAGGAAGGGTGCACTTGCTGTCTATTTGGAACCT 12830 Query 112020 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCG 112079 ||||| |||||| | |||| || | ||| | | ||||| ||| | |||||| | Sbjct 12829 TGGCATGCGGATGTTTTGGAATTTATAGAGATAAGGAAGAACCATGGTAAAGAGGAGATG 12770 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 | ||||| ||| | || | || || ||||| || ||||| |||||| ||||||| ||| Sbjct 12769 AGATGCCGTGATATATTTCCAGCACTATGGATACCTGATCTGTTCATGGAGAGAGTAGAG 12710 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGATGCCGT 112198 || || || ||| | | | ||||| || || || || || | |||| | Sbjct 12709 AAGGATGCAAACTGGACATTAATGTGTCCTGATGAATGC-CCTGGGATGCAAGATGTCTG 12651 Query 112199 GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGAC 112258 |||||| | ||| ||| | || | | || || ||||| |||| | | || Sbjct 12650 GGGTGACCAATTTAAAGAATTATATGAACACTATGAAAAAGAAGGTCGCGGTAGGAAAAC 12591 Query 112259 GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 | ||| | ||||| || | || |||| |||| ||||| ||||| || Sbjct 12590 AATTAAAGCACAAAGTTTGTGGTTTGCATTGCTACAGTCACAAATTGAGACAGGTACTCC 12531 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 || ||| || || || || ||| | || || |||||| | ||| ||||| ||| Sbjct 12530 ATTTATTTGCTATAAGGATGCAGCTAATCGTAAAAGCAATCAACAAAATCTGGGTACGAT 12471 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTAC-AGACAAAGATGAGACGGCTG 112437 || | ||| || ||||||||||| |||| | ||| || || | ||| || | Sbjct 12470 AAAATCTAGCAATCTATGTACAGAAATTATGGAGTATACTAGTTCAA-ACGAGGTCGCAG 12412 Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 112497 | |||||| | ||||| || | ||||| | ||| ||| || | |||| ||| | Sbjct 12411 TTTGTAACTTGGCATCTATAGGGCTCCCTCGTTTTGTTGATAGGGATAATAAGAAATTCG 12352 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCA-CAAAAAACCTAAACAGAGTTATT 112556 ||| | |||| || | ||||| | ||| | || ||| || ||||| ||||||| Sbjct 12351 ATTTTAAAAAGCTATATGAAGT-AGTAAAGGTAGCAACAAGGAATCTAAATGAAGTTATT 12293 Query 112557 GATAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 112615 ||| | | ||| || || ||| ||| | | |||||| ||||||| | ||| | Sbjct 12292 GATCGTGGATATTATCCTATTCCAGAGTGCAGG-AGGTCTAATCTGAGACATAGGCCACT 12234 Query 112616 TGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTC 112675 |||| | || || |||||||| || ||| || || | | | | ||| ||| || Sbjct 12233 TGGTTTAGGAGTACAAGGTCTTGCAGATTGTTTTATGATATTGAGATATCCATATGAATC 12174 Query 112676 CGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA 112735 | || || | | || | |||| |||||||||||||| || | || |||||||| Sbjct 12173 TAAAGATGCCAGGAAACTAAATGTTGAGATATTTGAGACAATATACTATGCTGCTCTTGA 12114 Query 112736 GGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGC 112795 || |||| ||| | |||||| ||||||| |||||||| ||| | ||||| ||||| Sbjct 12113 TGCAAGTTGTGAGCTAGCAGAGAAGTATGGTCCCTATGAAACATTTCAAGGTTCACCAGC 12054 Query 112796 TTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCACTACG-- 112851 | ||| |||| ||||||||| | | |||| ||| ||| || ||| | Sbjct 12053 TAGTAGAGGTCTGCTACAATTTGATCTCT-GGAATGTGCAACCCTCCTCAGGACTTTGGA 11995 Query 112852 ACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGG 112911 ||||||| || ||||| || || | || ||| | ||| | ||| | | Sbjct 11994 ACTGGGATTTACTGAAGGAGAAAATAGCTAAGTATGGCCTTAGAAACTCGTTGTTGGTAG 11935 Query 112912 CACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 112971 | |||||||| || || || || | || | | || ||||||||| |||||||||| | Sbjct 11934 CTCCAATGCCTACCGCATCTACATCTCAGTTACTAGGGAATAATGAAAGCTTTGAACCAT 11875 Query 112972 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 113031 || | || || |||| || | | | || ||||| | |||| || | Sbjct 11874 TTACCTCAAATATATATCATAGGCGTGTATTGTCTGGGGAGTTCTTTGTTGTGAATCCTC 11815 Query 113032 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGA---AGGATCTCA 113088 || | || |||| | || | || || ||| || ||| || | ||| Sbjct 11814 ATTTGTTGAATGATTTACTTGAATTGGGACTATGGGATGAGAGACTGAAACAGAGTATCA 11755 Query 113089 TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGT 113148 | | || || || |||||||||||| | ||| || || ||| | Sbjct 11754 TTGCTAACAATGGAAGT---GTTCAAAATATTGAGTCTATACCGCGAGATATTCGCGACC 11698 Query 113149 TGTACCGCACAGTTTGGGAAATCA-AGATGAAGGATGTCATTGACATGGCCGCAGATCGT 113207 ||||| || || |||||||| | | | ||| | || ||||| ||||| |||||| | Sbjct 11697 TGTACAAAACCGTCTGGGAAATTAGACAAAAAGCA-GTTATTGATATGGCGGCAGATAGA 11639 Query 113208 GGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTAT-TCATGGAAAGTCCAACGATGTC 113266 || | | |||| |||| ||| | | ||| | | | || ||| ||||| ||| | Sbjct 11638 GGACCATACATTTGTCAATCTCAGTCTCTAAATATTTATATTGCAAATGCCAACTATG-C 11580 Query 113267 CAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGG 113317 ||||| |||||||||||| | || | |||||||||||| | ||||| || Sbjct 11579 AAAGCTATCTTCTATGCACTTCTATGGATGGAAGAAGGGTTTAAAAACTGG 11529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620731242155360