Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1249 118 1e-21 seq62 105 8e-18 >seq1249 Length=14599 Score = 118 bits (130), Expect = 1e-21 Identities = 689/1088 (63%), Gaps = 24/1088 (2%) Strand=Plus/Plus Query 105953 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 106012 |||||||||| ||||||||| || | | || | || || || || |||||||| || Sbjct 11877 GGTTCAAAGCTTTCATTATTCCCTAGTAACTGAGATGTAGATGCGGTAGGCATTGGAGCT 11936 Query 106013 ATCAAAAGACTGTTACGAAGACCCT--TTTCCTTGATGCGTTCCTTGAGAACATCCCAGT 106070 | ||| | ||| | ||| || | || || | | ||||| || | |||||||| Sbjct 11937 ACCAACAACGAGTTTCTAAGGCCATACTTAGCTATTTTC--TCCTTCAGTAAATCCCAGT 11994 Query 106071 --CGTAGT--TGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGAC 106126 | ||| |||| |||| ||| |||| | | ||||||||| |||| ||| Sbjct 11995 TCCAAAGTCCTGAGGAGGGTTGCACATTCC-AGAGATCAAATTGTAGCAGACCTCTACTA 12053 Query 106127 GTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCC 106186 | || ||||| | |||||| ||||||| ||| | || || | ||||| || || Sbjct 12054 GCTGGTGAACCTTGAAATGTTTCATAGGGACCATACTTCTCTGCTAGCTCACAACTTGCA 12113 Query 106187 TCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCT 106246 || || | || | || || || ||||| || | |||| | | | |||| || | Sbjct 12114 TCAAGAGCAGCATAGTATATTGTCTCAAATATCTCAACATTTAGTTTCCTGGCATCTTTA 12173 Query 106247 GAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCA 106306 || ||| ||| || | | | ||||| ||| || |||||||| || || |||||| Sbjct 12174 GATTCATATGGATATCTCAATATCATAAAACAATCTGCAAGACCTTGTACTCCTAAACCA 12233 Query 106307 ATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC-AACGGGATAAAAATTTCTGTC 106365 | || || |||| || ||||||| | | ||| ||| || |||||| | | || Sbjct 12234 AGTGGCCTATGTCTCAGATTAGACCTCCT-GCACTCTGGAATAGGATAATATCCACGATC 12292 Query 106366 AATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATC 106425 ||| ||| |||||||| | || | | |||| | ||||| || |||| | |||| Sbjct 12293 AATAACTTCATTTAGATTCCTTGTTGCTACCTTTACTACTTCATATAGCTTTTTAAAATC 12352 Query 106426 AAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAAC 106485 || | | | || || ||| | || || | || |||||||| || ||||| Sbjct 12353 GAATTTCTTATTATCCCTATCAACAAAACGAGGGAGCCCTATAGATGCCAAGTTACAAAC 12412 Query 106486 AGCCGTCTCATCCTTATCT-GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAA 106544 || ||| | | | || || ||||| | |||||||||||| | ||| | || | Sbjct 12413 TGCGACCTCGTT-TGAACTAGTATACTCCATAATTTCTGTACATAGATTGCTAGATTTTA 12471 Query 106545 TCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGG 106604 |||| |||| ||| | ||| || || || || |||||||| ||| || | | Sbjct 12472 TCGTACCCAGATTTTGTTGATTGCTTTTACGATTAGCTGCATCCTTATAGCAAATAAATG 12531 Query 106605 GCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGCTGGTACAA 106664 | || || ||||| | ||||||| || | ||| ||||| | | | || | || Sbjct 12532 GAGTACCTGTCTCAATTTGTGACTGTAGCAATGCAAACCACA-AACTTTG--TGCTTTAA 12588 Query 106665 TGGCGT---TGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCAC 106721 | | | | | || || || || || | | || | ||| ||| | |||| Sbjct 12589 TTGTTTTCCTACCGCGACCTTCTTTTTCATAGTGTTCATATAATTCTTTAAATTGGTCAC 12648 Query 106722 CCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCACCC 106780 || | || | || || || || || ||||| | | | ||| | || || Sbjct 12649 CCCAGACATCTTGCATCCCAGG-GCATTCATCAGGACACATTAATGTCCAGTTTGCATCC 12707 Query 106781 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACAC 106840 | ||| || | || |||||| || || || ||||| || | || ||| | ||| | || Sbjct 12708 TTCTCTACTCTCTCCATGAACAGATCAGGTATCCATAGTGCTGGAAATATATCACGGCAT 12767 Query 106841 CGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGC 106900 | ||| || | ||| ||||| | || ||| | || |||| | |||||| ||| Sbjct 12768 CTCATCTCCTCTTTACCATGGTTCTTCCTTATCTCTATAAATTCCAAAACATCCGCATGC 12827 Query 106901 CATGGCTCAAGATAGACTGCGATAGATCCCT---TTCGACGCCCAGCTTGATTTACATAG 106957 || || || | |||||| || | | |||| || | ||| |||| | ||||| Sbjct 12828 CAAGGTTCCAAATAGACAGCAAGTGCACCCTTCCTTTTTCCTCCACCTTGGTCAACATAA 12887 Query 106958 CGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTC 107017 || ||||| | ||| | || || ||||||||||| | ||||| || |||||| || Sbjct 12888 CGTGCTGTATCATTATACACACGCAGCATTGGAATTAAACCATTAGACCTACCATTAGTA 12947 Query 107018 CCCCGAAT 107025 || || || Sbjct 12948 CCACGGAT 12955 >seq62 Length=14813 Score = 105 bits (116), Expect = 8e-18 Identities = 318/487 (65%), Gaps = 8/487 (2%) Strand=Plus/Minus Query 168227 TAAGGCTCTTTGAATATTCTCCTTGATATCCTTTGGATTGAATGGTGGTACATAGCAACT 168286 ||||||||||| | ||| | ||||||| || || || | ||| ||| | ||||| Sbjct 9732 TAAGGCTCTTTTCAGATTATTAATGATATCTTTAGGGTTATAGTTTGGAACAGAACAACT 9673 Query 168287 GAATCCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTA 168346 |||| ||||| ||||| || | || || || | |||||||| ||| |||| | || Sbjct 9672 CCATCCAGTACCAATACCATCAGCACCGTTAACTAAGACCATTGGAATGATTGGTACATA 9613 Query 168347 AAAGTCTGGTTCAATTGAGCGCCCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCG 168406 || ||||||||| | |||||||| | || || | | | || ||||| Sbjct 9612 GAATAAAGGTTCAATTTGTTGACCATCATCTTGCAGATATATTAACAATGGATCATC--- 9556 Query 168407 AGGATCA---AAGATCTTGCGAG-CCTCTTTGGTAAGTTTTGTGAAAATGTACCTCGTCT 168462 || || || || | |||| || | | ||| |||||| || ||||| | | Sbjct 9555 AGCTTCTGGGAAAATATAACGAGTCCAAGTAGATAA-TTTTGTAAATATGTAACGGGCAG 9497 Query 168463 GAGAAGCATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGT 168522 | |||||||| ||||| | |||||||||||||||| || | ||| | || Sbjct 9496 CACTTGCATCCTTGCCACCTTCTTTCCTGCTACCAAATTGACCACATGGCTGAAGTAAGT 9437 Query 168523 TAATGTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATA 168582 | | ||||| || | || | |||| || |||||||| | ||| || Sbjct 9436 TCAAATTGTTACTTCCAACAAAATCTTGCGCCATATTTACAATCGTACTCTGTAAAGAAG 9377 Query 168583 CTTCACCATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCA 168642 |||||||||| ||||| ||| | || || ||||| | || | |||||| || |||| Sbjct 9376 CTTCACCATGATGGTATGCACTATGTTCAGCAACATAACCAGCTAATTGTGCTACTTTCA 9317 Query 168643 TTTCATCCTTGAGATTCTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGA 168702 |||||| || || ||||| | || || ||| | |||||||| ||| |||||| | Sbjct 9316 TTTCATTATTCAGCTTCTTTTTAAACACAGAATATAAAACTTTCCTTTGTCCAGGCTTTA 9257 Query 168703 GACCATC 168709 ||||| Sbjct 9256 ATCCATC 9250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589970195095120