Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq431 147 5e-30 seq581 113 1e-19 >seq431 Length=1763 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 194926 CTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCA 194985 |||||||| | || | ||| ||||| || ||||||||||| || | | |||||| ||| Sbjct 123 CTCAAAACTAAATGTAAAGTAGACTCCTTCTGAATATTGTAGTCTGATAAAGTTCTGCCA 182 Query 194986 TCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTG 195045 ||||| || ||||| || || ||||| | |||||||| |||||||| || || || ||| Sbjct 183 TCTTCAAGTTGCTTTCCAGCAAAGATTAAACGTTGTTGATCTGGAGGTATTCCCTCCTTG 242 Query 195046 TCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACC 195105 ||||| || ||| ||| || || ||||| || || ||| ||| ||||| | |||| Sbjct 243 TCTTGTATCTTTGCCTTTACATTTTCAATTGTATCAGAAGGTTCAACTTCTAATGTAATA 302 Query 195106 GTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || || || || ||||| || || | ||||||| Sbjct 303 GTTTTCCCAGTTAAGGTTTTAACAAAAATTTGCATT 338 >seq581 Length=7318 Score = 113 bits (124), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 ||||| | ||||| || || || || |||||||| ||||| | | ||| | ||||| Sbjct 1190 AAAACTAAATGAAG-GTTGATTCCTTCTGAATATTATAATCAGATAAAGTCCGACCATCC 1248 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || || || || || || || || | || |||||| || || ||||| |||||||| ||| Sbjct 1249 TCAAGTTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGTGGAATCCCTTCTTTATCT 1308 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 |||||||| ||| || || ||||| || || || ||| |||||||| || | || Sbjct 1309 TGAATTTTAGCCTTTACATTTTCAATAGTATCAGATGGTTCAACTTCAAGTGTTATTGTT 1368 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| || || || | ||||| Sbjct 1369 TTACCCGTTAAAGTCTTCACAAAAATCTGCAT 1400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109461158494946