Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1249 338 7e-88 seq196 297 2e-75 >seq1249 Length=14599 Score = 338 bits (374), Expect = 7e-88 Identities = 1175/1835 (64%), Gaps = 52/1835 (3%) Strand=Plus/Plus Query 47009 TTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCAT 47068 || ||||| ||| || || |||||| |||||||| ||||||||||||| ||||| Sbjct 11507 TTGTGTTCTTAAGTAGTAAGCACCAGTTTTTAAACCCTTCTTCCATCCATAGAAGTGCAT 11566 Query 47069 ACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATC 47128 | || || || | ||| | | | || ||||| |||||| ||||| ||| ||| Sbjct 11567 AGAAGATAGCTTTGCATAGTTGGCATTTGCAATATAAATATTTAGAGACTGAGATTGACA 11626 Query 47129 AATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATAC 47188 ||| ||| |||||||| || |||||||| | || | ||||| || ||||| || Sbjct 11627 AATGTATGGTCCTCTATCTGCCGCCATATCAATAACTGCTTTTTGTCTAATTTCCCAGAC 11686 Query 47189 TGTTTTATAAATTTGTTTAATGTCTTCTGGGAGA---TTAGTATTTTGAATAGATCCTCC 47245 ||||| || | | ||| ||| || | | | | ||||||||| | ||| Sbjct 11687 GGTTTTGTACAGGTCGCGAATATCTCGCGGTATAGACTCAATATTTTGAACACTTCCATT 11746 Query 47246 gttttctataattttgttttttaat---tcatttgaccaaagttttcgttcagttaatgt 47302 ||| | || || | | ||| | | |||| ||| ||| |||| ||| Sbjct 11747 GTTAGCAATGATACTCTGTTTCAGTCTCTCATC---CCATAGTCCCAATTCAAGTAAATC 11803 Query 47303 ttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTAT---A 47359 || || | ||||||||| |||| || || ||||| | ||| ||| |||| | Sbjct 11804 ATTCAACAAATGAGGATTCACAACAAAGAACTCCCCAGACAATAC---ACGCCTATGATA 11860 Query 47360 TATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGC 47419 |||||| ||| ||||||| | ||||||||| || | | |||| || ||||| Sbjct 11861 TATATTTGAGGTAAATGGTTCAAAGCTTTCATTATTCCCTAGTAACTGAGATGTAGATGC 11920 Query 47420 TGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNN 47479 |||||||| | || || || || ||||| | ||||| || ||| | Sbjct 11921 GGTAGGCATTGGAGCTACCAACAACGAGTTTCTAAGGCCATACTTAGCTATTTTCTCCTT 11980 Query 47480 NNNNNGTTTCCAATCCCAAAGATCTGATG---GAACAACATTCCAAAAATCATATTGAAG 47536 | ||| | |||||| |||| | | |||||||| | |||| |||| || Sbjct 11981 CAGTAAATCCCAGTTCCAAAGTCCTGAGGAGGGTTGCACATTCCAGAGATCAAATTGTAG 12040 Query 47537 AATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAG 47596 | ||| |||| || ||||| | | |||||| ||| ||||| || | || || Sbjct 12041 CAGACCTCTACTAGCTGGTGAACCTTGAAATGTTTCATAGGGACCATACTTCTCTGCTAG 12100 Query 47597 TTCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATT 47656 ||||||||||| || | ||| ||| |||||||| |||||||| | | ||||| || Sbjct 12101 CTCACAACTTGCATCAAGAGCAGCATAGTATATTGTCTCAAATATCTCAACATTTAGTTT 12160 Query 47657 CCTTGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTG 47716 ||| || ||| |||||| | ||||| || |||||| | ||||| Sbjct 12161 CCTGGCATCTTTAGATTCATATGGATATCTCAATATCATAAAACAATCTGCAAGACCTTG 12220 Query 47717 AACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGC-TTCTGGTAATGGAT 47775 || || | ||||| ||| ||||| | |||||| | | || ||||| | |||| Sbjct 12221 TACTCCTAAACCAAGTGGCCTATGTCTCAGATTAGACCTC-CTGCACTCTGGAATAGGAT 12279 Query 47776 ATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTA 47835 | | ||| |||| || ||||||| || | ||| || Sbjct 12280 AATATCCACGATCAATAACTTCATTTAGATTCCTTGTTGCTACCTTTACTACTTCATATA 12339 Query 47836 ATTTATTAAAATCAAACTTGTTATT-----TAT-AACAAACCTATTAAGTGCTATAGATG 47889 || |||||||| || || ||||| ||| |||||| | | || ||||||||| Sbjct 12340 GCTTTTTAAAATCGAATTTCTTATTATCCCTATCAACAAAACGAGGGAGCCCTATAGATG 12399 Query 47890 CTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGAT 47949 | | ||||| || || ||||| |||| | ||||||| | || ||||| | |||||||| Sbjct 12400 CCAAGTTACAAACTGCGACCTCGTTTGAACTAGTATACTCCATAATTTCTGTACATAGAT 12459 Query 47950 TACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGT 48009 | | | |||| || ||||||| |||||| ||||| | ||| ||| ||||| | Sbjct 12460 TGCTAGATTTTATCGTACCCAGATTTTGTTGATTGCTTTTACGATTAGCTGCATCCTTAT 12519 Query 48010 AAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCC 48069 | ||||| || || || || || || || || | ||| | ||||| | Sbjct 12520 AGCAAATAAATGGAGTACCTGTCTCAATTTGTGACT-----GTAGCAATGCAAAC---CA 12571 Query 48070 TAGCCTTTATAACAGCTCTA---GCTTTATTATC---ATGTTCGTATT--TAGT----AT 48117 | |||| | ||| || | ||| || | | ||| | || |||| || Sbjct 12572 CAAACTTTGT----GCTTTAATTGTTTTCCTACCGCGACCTTCTTTTTCATAGTGTTCAT 12627 Query 48118 ATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACA 48177 |||| | | ||||| || || | |||| | | |||||| ||||||| |||||||| Sbjct 12628 ATAATTCTTTAAATTGGTCACCCCAGACATCTTGCATCCCAGGGCATTCATCAGGACACA 12687 Query 48178 TCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAG 48237 | |||| ||| | |||| || | |||||| ||| || | ||| |||||||| || | Sbjct 12688 TTAATGTCCAGTTTGCATCCTTCTCTACTCTCTCCATGAACAGATCAGGTATCCATAGTG 12747 Query 48238 CTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAA 48297 || ||||| ||| | ||| | || || || ||| ||| | | | || | || Sbjct 12748 CTGGAAATATATCACGGCATCTCATCTCCTCTTTACCATGGTTCTTCCTTATCTCTATAA 12807 Query 48298 AGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTAT 48357 | |||| | ||| |||||||| ||||| ||||| | || | | |||| | ||| Sbjct 12808 ATTCCAAAACATCCGCATGCCAAGGTTCCAAATAGACAGCAAGTGCACCCTTCCTTTTTC 12867 Query 48358 TACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATAC 48417 || ||||| || | ||| | || |||| ||||| || | | |||||| | | || Sbjct 12868 CTCCACCTTGGTCAACATAACGTGCTGTATCATTATACACACGCAGCATTGGAATTAAAC 12927 Query 48418 CATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTG 48477 |||| || ||||||| || || || || ||| ||||| ||||||| || | Sbjct 12928 CATTAGACCTACCATTAGTACCACGGATGTATGATCCTGCAGCTCGTATATTAGAAACAG 12987 Query 48478 AAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAA 48537 | |||| ||||| || | || ||| ||||| || || |||||| ||| Sbjct 12988 CCACCCCTAATCCACCAGCAGTCTTGCTTATATTTGCACATTTCTTTAGTGTATCAAAAA 13047 Query 48538 TTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGAC 48597 | || || || |||||| ||| || | | ||||||| ||||| || || || Sbjct 13048 TGCCATCAATTGAGTCATCTGACATTTTGAGAATAAAACAAGAGGACATCTGTGGGCGAA 13107 Query 48598 AAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATT 48657 ||| || | ||| |||||||| |||| |||||| |||| | |||| || | || || Sbjct 13108 GAGTACCAGCATTGAATAATGTCGGAGTAGCATGAGTAAAATACTTCTGAGAGAGCAGTT 13167 Query 48658 TATATGTTTCAATAACAGAATCTATA-TCCCATTGATGTATACCTATAGATACACGCATT 48716 ||| |||||||| | | ||||||| | |||| | || ||||| || || | |||| Sbjct 13168 CATAAGTTTCAATTGCTGCATCTATATTACCATAG-TGGATACCACAGGAGACTCTCATT 13226 Query 48717 AACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCC 48776 || | | ||| || ||||| ||||| || | || | || | ||| ||| |||| Sbjct 13227 AATAGGTGTTGTGGCCTTTCCACAATCTTATCATCGACCCGCAGTAAATAAGATCTTTCT 13286 Query 48777 AATGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 48811 | || |||||| ||||||||| ||| ||| || Sbjct 13287 AGAGTCTTAAAAGCAAAATAGTCATATTCAAAATC 13321 >seq196 Length=8782 Score = 297 bits (328), Expect = 2e-75 Identities = 585/845 (69%), Gaps = 23/845 (3%) Strand=Plus/Minus Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730 |||| ||||| || |||| ||| ||||| || |||||||| || | |||||| ||| | Sbjct 7534 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 7475 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTA 18790 |||| ||||||||||||| | ||||| |||| ||| | ||| | | || |||| Sbjct 7474 CCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGCAAACAGTA 7415 Query 18791 GTCTATCCGCTACAAATTTAATATATGTGTTCATCATATC-ACAATTCATTCCTATTAAT 18849 | ||| || ||||||| ||||||| | ||| | ||| | ||||||| || || | Sbjct 7414 AACGATCAGCAACAAATTCAATATATTGGGCCATTA-ATCTAGAATTCATCCCAATGAGA 7356 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 | ||||||| || ||| | |||| |||| | | || || |||| |||||| Sbjct 7355 TCTACAGGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTATAATT 7296 Query 18910 GATACAACTCTATCTTCATT--AGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | |||||| || ||| || | ||| || | |||| | | |||||| ||| Sbjct 7295 TCTTGAACTCTTTCA-CATGGAAGACGATTATTTAATGT-TTTATAAAGTAAACATCCAA 7238 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | || ||| | || || |||||| ||| | |||||||||||||||||| ||||||| Sbjct 7237 AGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCAGGCA 7178 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAATATACCT 19086 | | ||| | ||| || | ||| ||||||| | |||| | | |||||||| || |||||| Sbjct 7177 TTAATCCACGTTTCTTAAGCCAAAATATAGCA-CAAAAGCTGCCAGAAAACAAGATACCT 7119 Query 19087 TCTACTGCTGCAAAAG-CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCA 19145 || ||||| |||||| ||| || ||||||| || || | | |||||||| ||||| Sbjct 7118 TCAACTGC-ACAAAAGCCAATTACTCTTTCTGCA-AATGACC--GATTATTATTCATCCA 7063 Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGG-CATTGTCTCTATAGAATTAAATA 19204 || |||||| || ||||| |||| || ||| | ||| ||| | | ||| | Sbjct 7062 CTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGT-GATATTGCTTCAAAAA 7004 Query 19205 GATACAT---ACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTT 19261 | ||| || || | | |||| | |||| ||| || || | || ||| Sbjct 7003 G---CATTTGGCGATCTTTTACATCTGATATATATTGATCAATTAAAAGGGAATAAGTTT 6947 Query 19262 CTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCT 19321 | ||||| | || ||||| || |||||||| ||| | ||| |||||| ||| | Sbjct 6946 CACTGTGAATCTGCTCCATAGCAATTTGAAATCCATAATACATTCTAGCTTCTTCTATTT 6887 Query 19322 GTA-CTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCA 19380 | | || | || ||||| || | | || || || | || |||||||||||||||||| Sbjct 6886 GAATCTCCTTTAAAAAAT-TTACAGCTAAGTTCTCCATTACAATTCCATCACTAGCTGCA 6828 Query 19381 AAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCA 19440 ||||||||||| |||| |||||||||||||||||| | |||| | | |||||| Sbjct 6827 AAAAATGCTAAGACATATTTAATAAAATGTTTTTCTGGTTCCTTTAAACTTTCCCAATCT 6768 Query 19441 TTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTA 19500 | || || | | |||||||| ||||| | |||||||| || || ||| ||||||| Sbjct 6767 CTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTCTTTTTTG 6708 Query 19501 TACAT 19505 ||||| Sbjct 6707 TACAT 6703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562098696094320